Pinned Loading

1. DECONVersation DECONVersation Public

   DECONVersation uses LLM-derived embeddings to deconvolve bulk RNA-seq data into robust cell type proportions, mitigating batch effects inherent to single-cell reference matrices.

   Python 3

2. AlsGeneBroswer AlsGeneBroswer Public

   An interactive Shiny application for exploring transcriptomic data from the NYGC ALS Consortium allowing researchers to visualize differential gene expression across tissues, genetic subtypes, and …

   R 1

3. LupusExplorer LupusExplorer Public

   A curated, open-access dashboard synthesizing published SLE genomic literature into an interactive hub. Effortlessly filter risk variants, cell-type expression profiles, and biological pathways to …

   Python

4. scFM-tracker scFM-tracker Public

   A curated, continuously updated index tracking newly published single-cell foundation models (scFMs), pre-training datasets, code, and model weights across single-cell genomics and multi-omics.

   Python 2

5. LanguageMapper LanguageMapper Public

   LanguageMap — an interactive tool for exploring the world's linguistic diversity, region by region. Click anywhere on the map to see which languages are spoken there, then dig into each one's class…

   JavaScript

6. TMEmbed TMEmbed Public

   A Python package for predicting tumor microenvironment (TME) subtypes from bulk transcriptomic data using batch-corrected, model-agnostic cell embeddings.

   Python