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Create outdir if not found

bugSomething isn't workingSomething isn't working

Status: Open.

#45 In DessimozLab/orthoxml-tools;

· ali-yz opened on Aug 3, 2026

filter orthoxml based on list of species or list of HOG ids

Status: Open.

Feature

#44 In DessimozLab/orthoxml-tools;

· sinamajidian opened on Mar 18, 2026

Extract strategy duplicates HOGs in a paralog group

Status: Open.

#43 In DessimozLab/orthoxml-tools;

· nromashchenko opened on Feb 18, 2026

AttributeError: 'NoneType' object has no attribute 'remove'

Status: Open.

#42 In DessimozLab/orthoxml-tools;

· sinamajidian opened on Feb 13, 2026

filter example

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#41 In DessimozLab/orthoxml-tools;

· sinamajidian opened on Feb 13, 2026

add note to orthoxml to keep track of filtering

Status: Open.

Feature

#40 In DessimozLab/orthoxml-tools;

· sinamajidian opened on Feb 10, 2026

feature-request: report orthology type 1-to-1 or 1-to-many

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#39 In DessimozLab/orthoxml-tools;

· sinamajidian opened on Dec 30, 2025

filtering by completeness score changes species fields

Status: Open.

#12 In DessimozLab/orthoxml-tools;

· nromashchenko opened on Jun 20, 2025

CompletenessScore filtering keeps genes from exluded HOGs

Status: Open.

#11 In DessimozLab/orthoxml-tools;

· nromashchenko opened on Jun 20, 2025