Adjust nallo deliverable requirements for NBS

[ieduba]

Description

When we run nallo for newborn screening cases for CMMS, we will skip many workflows and produce many fewer files. In order to be able to store the results on housekeeper, we need to make the missing files non-mandatory.

Added

Changed

• Made output files from phasing, methylation, peddy, repeat calling, and (most) SV calling non-mandatory

Fixed

Testing

How to prepare for test

• ssh to Hasta
• Test your branch with

hermes-test-deploy <branch-name>
hermes-test <command here>

How to test

• login to ...
• do ...

Expected test result

• check that ...
• Take a screenshot and attach or copy/paste the output.

Review

• code approved by
• tests executed by
• "Merge and deploy" approved by
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This version is a:

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[codecov-commenter]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 92.91%. Comparing base (4a6315e) to head (41f19d1).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #171   +/-   ##
=======================================
  Coverage   92.91%   92.91%           
=======================================
  Files          28       28           
  Lines        1030     1030           
=======================================
  Hits          957      957           
  Misses         73       73           

Flag	Coverage Δ
unittests	92.91% <ø> (ø)

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