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add d4 file to deliver in balsamic #142

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1a4b6a1
Merge branch 'main' of github.com:Clinical-Genomics/hermes
mathiasbio Aug 12, 2024
d782b75
Merge branch 'main' of github.com:Clinical-Genomics/hermes
mathiasbio Nov 11, 2024
bc66e4c
Merge branch 'main' of github.com:Clinical-Genomics/hermes
mathiasbio Feb 10, 2025
10092d7
Merge branch 'main' of github.com:Clinical-Genomics/hermes
mathiasbio Mar 17, 2025
e2cb2f8
Merge branch 'main' of github.com:Clinical-Genomics/hermes
mathiasbio May 12, 2025
8a28db9
Merge branch 'main' of github.com:Clinical-Genomics/hermes
mathiasbio Jul 23, 2025
f07c71b
add d4 to deliverables
mathiasbio Jul 23, 2025
dbfe392
fix
mathiasbio Jul 23, 2025
a99d627
test
mathiasbio Jul 23, 2025
66f8af3
test order
mathiasbio Jul 23, 2025
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test
mathiasbio Jul 23, 2025
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6 changes: 6 additions & 0 deletions cg_hermes/config/balsamic.py
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Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,7 @@
"BALSAMIC_X.X.X_graph.pdf": ["balsamic-dag"],
"multiqc_report.html": ["html", "multiqc-html"],
"multiqc_data.json": ["json", "multiqc-json"],
"tumor.d4": ["d4file", "qc-metrics-d4file"],
# Custom QC
"metrics_deliverables.yaml": ["yaml", "qc-metrics-yaml"],
# Alignment files (PANEL & WGS)
Expand Down Expand Up @@ -268,6 +269,11 @@
"is_mandatory": True,
"used_by": ["audit"],
},
frozenset(RAW_TAGS["tumor.d4"]): { # D4 coverage
"tags": ["d4", "coverage", "tumor"],
"is_mandatory": True,
"used_by": ["scout"],
},
# Custom QC
frozenset(RAW_TAGS["metrics_deliverables.yaml"]): { # QC metrics
"tags": ["qc-metrics", "deliverable"],
Expand Down
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