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Scout upload RNA to LR - #5193

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kedhammar wants to merge 3 commits into
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scout-upload-rna-to-lr
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Scout upload RNA to LR#5193
kedhammar wants to merge 3 commits into
masterfrom
scout-upload-rna-to-lr

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@kedhammar

@kedhammar kedhammar commented Jul 9, 2026

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Description

Closes issue #5089

Added

Changed

Fixed

How to prepare for test

  • Ssh to relevant server (depending on type of change)
  • Use stage: us
  • Paxa the environment: paxa
  • Install on stage (example for Hasta):
    bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_cg -t cg -b scout-upload-rna-to-lr -a

How to test

  • Do ...

Expected test outcome

  • Check that ...
  • Take a screenshot and attach or copy/paste the output.

Review

  • Tests executed by
  • "Merge and deploy" approved by
    Thanks for filling in who performed the code review and the test!

This version is a

  • MAJOR - when you make incompatible API changes
  • MINOR - when you add functionality in a backwards compatible manner
  • PATCH - when you make backwards compatible bug fixes or documentation/instructions

Implementation Plan

  • Document in ...
  • Deploy this branch on ...
  • Inform to ...

@kedhammar kedhammar linked an issue Jul 9, 2026 that may be closed by this pull request
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@sonarqubecloud

sonarqubecloud Bot commented Jul 9, 2026

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Enable RNA upload to LR WGS samples

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