feat: acquisition method schema v2 — FOV patterns, per-well Z, tilted-plate pre-AF (GUI + API) - #593

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hongquanli wants to merge 19 commits into

feat/squid-core-servicefrom

feat/acquisition-schema-v2

Commits on Jul 11, 2026

feat: port per-region laser-AF offset core hook from PR #562

hongquanli
and
claude
committed
c230268
feat: parse fov_pattern, well_z_offsets_um, z_plan in acquisition yaml (schema v2)

hongquanli
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claude
committed
501987a
feat: centered_grid fov_pattern dispatch in service region configuration

hongquanli
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claude
committed
2f4c57a
feat: grid_subset fov_pattern with deterministic row-major tile indices

hongquanli
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claude
committed
9b89b32
feat: random fov_pattern with reproducible per-well seeding

hongquanli
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claude
committed
ef1ce43
feat: plumb well_z_offsets_um into the per-region laser-AF offset hook with preflight validation

hongquanli
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claude
committed
2a73ee4
test: pin explicit-zero omission and laser_af_range faults for well_z_offsets_um

hongquanli
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claude
committed
197a27a
feat: z_plan tilted-plate pre-AF positioning (plane points + gen-with-laser-AF)

hongquanli
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claude
committed
b6036c5
test: pin gen-focus-map plane baking under reflection AF

hongquanli
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claude
committed
de0d353
feat: GUI wellplate saves emit wells + fov_pattern for Select Wells mode (schema v2)

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83b086a
test: pin legacy regions form for non-Select-Wells saves and coverage pattern keys

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51be15b
feat: wellplate widget loads v2 wells+coverage yamls; clear warning for API-only patterns

hongquanli
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claude
committed
50ac77c
fix: propagate yaml-load abort as failure so callers cannot act on false success

hongquanli
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claude
committed
00f96c1

Commits on Jul 12, 2026

docs+registry: schema v2 fields in method summaries and API docs

hongquanli
and
claude
committed
5c698ad
fix: carry #562 test-stub update for the ported perform_autofocus hook

hongquanli
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claude
committed
5d70d33
docs: correct well_z_offsets_um lifecycle wording (consumed-and-cleared at run start)

hongquanli
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claude
committed
42b4027
fix: validate z_plan colinearity (B1) and signal finish on gen-map early returns (B2)

hongquanli
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claude
committed
30a8e53
feat: faithful v2 acquisition-record for API/service runs (fov_pattern threaded to the writer)

hongquanli
and
claude
committed
6a5e671
test: round-trip the service grid branch as v2 centered_grid

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claude
committed
b53c52c

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feat: acquisition method schema v2 — FOV patterns, per-well Z, tilted-plate pre-AF (GUI + API) - #593

feat: acquisition method schema v2 — FOV patterns, per-well Z, tilted-plate pre-AF (GUI + API)#593
hongquanli wants to merge 19 commits into
feat/squid-core-servicefrom
feat/acquisition-schema-v2

Commits on Jul 11, 2026

feat: port per-region laser-AF offset core hook from PR #562

feat: parse fov_pattern, well_z_offsets_um, z_plan in acquisition yaml (schema v2)

feat: centered_grid fov_pattern dispatch in service region configuration

feat: grid_subset fov_pattern with deterministic row-major tile indices

feat: random fov_pattern with reproducible per-well seeding

feat: plumb well_z_offsets_um into the per-region laser-AF offset hook with preflight validation

test: pin explicit-zero omission and laser_af_range faults for well_z_offsets_um

feat: z_plan tilted-plate pre-AF positioning (plane points + gen-with-laser-AF)

test: pin gen-focus-map plane baking under reflection AF

feat: GUI wellplate saves emit wells + fov_pattern for Select Wells mode (schema v2)

test: pin legacy regions form for non-Select-Wells saves and coverage pattern keys

feat: wellplate widget loads v2 wells+coverage yamls; clear warning for API-only patterns

fix: propagate yaml-load abort as failure so callers cannot act on false success

Commits on Jul 12, 2026

docs+registry: schema v2 fields in method summaries and API docs

fix: carry #562 test-stub update for the ported perform_autofocus hook

docs: correct well_z_offsets_um lifecycle wording (consumed-and-cleared at run start)

fix: validate z_plan colinearity (B1) and signal finish on gen-map early returns (B2)

feat: faithful v2 acquisition-record for API/service runs (fov_pattern threaded to the writer)

test: round-trip the service grid branch as v2 centered_grid