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Maize Update - #321

Merged

asherpasha merged 44 commits into

masterfrom

dev

Jun 17, 2026

Merged

Maize Update#321
asherpasha merged 44 commits into
masterfrom
dev

Commits on Mar 23, 2026
- Revert "Update master branch"
  
  asherpasha
  authored and
  rmobmina
  committed
  6b5f2be
- edited microarray and added 2 new endpoints and created efp_proxy endpoints
  rmobmina
  committed
  3a00428
- dynamic ORMs
  rmobmina
  committed
  47e0ded
- tried to fix to pass
  rmobmina
  committed
  199dc91
- Add fail-fast: false to see all Python test results
  rmobmina
  committed
  d4b97be
- Add Sphinx/reST docstrings to dynamic ORM functions
  rmobmina
  committed
  26e4f0f
- comment style
  rmobmina
  committed
  4173f8e
- Add Q&A reference guide for supervisor meetings
  rmobmina
  committed
  6da9573
- Add guide explaining schema definition vs database creation
  rmobmina
  committed
  800c9ec
- Add BARUtils validation, Sphinx docstrings, and fix SQL injection
  rmobmina
  committed
  d7291f9
- got rid of inaccurate markdown files
  rmobmina
  committed
  510e7b0
- Fix flake8 linting errors
  rmobmina
  committed
  eecb4c8
- flake8 ran
  rmobmina
  committed
  358ede2
- Fix dynamic eFP query fallback for CI mirrors
  rmobmina
  committed
  ff50982
- fixed syntax error
  rmobmina
  committed
  52a2def
- Refactor EFP services and simplify schema definitions
  rmobmina
  committed
  2b8daef
- Fix missing length fields for string-type QA columns
  rmobmina
  committed
  51bca30
- Add DB_HOST environment variable for Docker MySQL connection
  rmobmina
  committed
  e185e62
- Handle external API errors gracefully in ATTED proxy
  rmobmina
  committed
  ab21999
- Revert proxy changes - external API issue unrelated to EFP work
  rmobmina
  committed
  eca92c7
- fixed?
  rmobmina
  committed
  c4741ad
- fixed comments
  rmobmina
  committed
  e8411ee
- added new schemas
  rmobmina
  committed
  45d2a6d
- should pass all checks?
  rmobmina
  committed
  a5d07a8
- Fix TEXT columns in primary keys causing MySQL error
  rmobmina
  committed
  c03ef25
- checkcheck
  rmobmina
  committed
  b4d54c1
- cleaned flake
  rmobmina
  committed
  e09790f
- passed?
  rmobmina
  committed
  77bbf7d
- updated schema
  rmobmina
  committed
  22f1dae
- fixed metadata
  rmobmina
  committed
  b81db62
- set VARCHAR to 255
  rmobmina
  committed
  2271479
- removed POST from efp proxy and simplified endpoints to a single one
  rmobmina
  committed
  e5ace17
- add SQL Alchemy binds
  rmobmina
  committed
  9145384
- Deleted some unused files, renamed efp proxy to gene_expression
  rmobmina
  committed
  270a40b
- fixed naming error
  rmobmina
  committed
  2c4ef4a
- restore bootstrap_simple_efp_dbs.py and efp_bootstrap.py needed for CI
  rmobmina
  committed
  fda1648
- add gene ID detection and probeset conversion utilities for eFP expression endpoint
  rmobmina
  committed
  a2aa164
Commits on Apr 3, 2026
- Merge branch 'dev' into fix/refactor-efp-data-and-schemas
  asherpasha
  authored
  4c1823c
- Merge pull request #305 from rmobmina/fix/refactor-efp-data-and-schemas
  asherpasha
  authored
  bedbddf
- Linting...
  asherpasha
  committed
  128fb94
- Merge pull request #312 from asherpasha/dev
  asherpasha
  authored
  d8f6ac6
Commits on Jun 2, 2026
- Added maize v5
  asherpasha
  committed
  0538915
- Dependancies updated.
  asherpasha
  committed
  3dcd726
- Merge pull request #320 from asherpasha/dev
  asherpasha
  authored
  d6eb732

Commits

Commits on Mar 23, 2026

Commits on Apr 3, 2026

Commits on Jun 2, 2026