Production Deploy#3457
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Place compendia test data to data-refinery-test-assets bucket Move microarray.txt and rnaseq.txt under workers/tests/data Sort microarray.txt and rnaseq.txt URLs
Don't include 0 downloads users into stats calculation
Use GH workflow badge for refine.bio status
Update workers test data
…adge Update build status badge
Update post downloads summary job
Add a command that gathers/shows stats based on a accession code list. The areas of interest include attempted/available experiments (total and broken down by source) as well as attempted/available samples (total and broken down by source). The total number of jobs created includes all job types.
Export SYSTEM_VERSION when unset Set platform for `run_management_command.sh`
It's mostly done to speed up the prod (different docker registry) build process.
Update common/foreman scripts
…-for-prod-image-builds Extend using of staging images cache
- Unify secret names - Move SSH_PUBLIC_KEY to vars - Set GH env secrets in necessary scopes only - Add environment and release version into Sentry context
…quests Implement data request tracking
Use 1Password as a secrets storage
Update downloaders image aspera path.
- Bump certifi version - Remove unused coveralls dependency
…-tests Update downloaders image
…ncies Update pip requirements
…op-test-jobs Split downloaders/no_op test jobs
…ntal-stage Add Sample::developmental_stage field support
…start Add API server SSH connection check
- Remove 30d+ old Docker images.
Add deploy box cleanup instructions
- Use wget instead of curl for gene index downloads - Set specific unzip/rm file instructions - Set pre-commit to use Python 3.11
Fix no-op tests
…tart-flag Add restart flag to API docker container
Scale up Staging API to t2.small
…estart Map static dir on API to /var/www/volumes_static on deploy
Co-authored-by: Arkadii Yakovets <ark@ccdatalab.org>
…pi-static-dir 3452 Ensure /var/www/volumes_static exists on container restart
…-volume scale up worker volume
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Production Deploy v1.46.22
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genotypetogenetic_informationdevelopmental_stage