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Matrix issue with runCINMF? #340

@samuel-marsh

Description

@samuel-marsh

Hi Liger team,

So I've run into issue sometimes when running CiNMF. To be honest I'm not sure where the error is coming from. This is the message I get:

Error: Mat::init(): requested size is not compatible with column vector layout    
  
Error: Mat::init(): requested size is not compatible with column vector layout
✖ Taking the consensus ... failed

My current analysis object is 95 datasets with total of ~55K cells.

The following conditions (k, l, nRandomStarts) were successful/failed.
Successes:

  • k6, l4, 50 nRandomStarts
  • k6, l4, 100 nRandomStarts
  • k8, l4, 10 nRandomStarts
  • k8, l4, 50 nRandomStarts
  • k15, l4, 75 nRandomStarts

Failures:

  • k8, l4, 100 nRandomStarts
  • k15, l4, 100 nRandomStarts

I was wondering if you have any insights into this issue or ways to resolve it?

Thanks!
Sam

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