From eaefe45849ab459c782c56e2fc25ade5b45c5085 Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Thu, 21 May 2026 14:21:56 +0200 Subject: [PATCH 01/12] chore(skore): Using pixi to manage the lock files and CI --- .github/dependabot.yml | 18 +- .github/workflows/pytest.yml | 227 +- .github/workflows/sphinx.yml | 116 +- .pre-commit-config.yaml | 1 + activate_dot.sh | 1 + ci/pip-compile.sh | 108 - .../skore/python-3.11/.python-version | 1 - .../scikit-learn-1.5/test-requirements.txt | 460 - .../test-requirements.txt | 400 - .../scikit-learn-1.8/test-requirements.txt | 460 - .../skore/python-3.12/.python-version | 1 - .../scikit-learn-1.5/test-requirements.txt | 457 - .../scikit-learn-1.8/test-requirements.txt | 457 - .../skore/python-3.13/.python-version | 1 - .../scikit-learn-1.5/test-requirements.txt | 453 - .../scikit-learn-1.8/test-requirements.txt | 453 - .../skore/python-3.14/.python-version | 1 - .../scikit-learn-1.7/test-requirements.txt | 453 - .../scikit-learn-1.8/sphinx-requirements.txt | 488 - .../scikit-learn-1.8/test-requirements.txt | 453 - .../test-requirements.txt | 455 - .../test-requirements.txt | 454 - docs/how-to/bump-minimal-python-version.md | 11 - pixi.lock | 30356 ++++++++++++++++ pixi.toml | 68 + 25 files changed, 30489 insertions(+), 5864 deletions(-) create mode 100644 activate_dot.sh delete mode 100755 ci/pip-compile.sh delete mode 100644 ci/requirements/skore/python-3.11/.python-version delete mode 100644 ci/requirements/skore/python-3.11/scikit-learn-1.5/test-requirements.txt delete mode 100644 ci/requirements/skore/python-3.11/scikit-learn-1.5_and_mlflow-2/test-requirements.txt delete mode 100644 ci/requirements/skore/python-3.11/scikit-learn-1.8/test-requirements.txt delete mode 100644 ci/requirements/skore/python-3.12/.python-version delete mode 100644 ci/requirements/skore/python-3.12/scikit-learn-1.5/test-requirements.txt delete mode 100644 ci/requirements/skore/python-3.12/scikit-learn-1.8/test-requirements.txt delete mode 100644 ci/requirements/skore/python-3.13/.python-version delete mode 100644 ci/requirements/skore/python-3.13/scikit-learn-1.5/test-requirements.txt delete mode 100644 ci/requirements/skore/python-3.13/scikit-learn-1.8/test-requirements.txt delete mode 100644 ci/requirements/skore/python-3.14/.python-version delete mode 100644 ci/requirements/skore/python-3.14/scikit-learn-1.7/test-requirements.txt delete mode 100644 ci/requirements/skore/python-3.14/scikit-learn-1.8/sphinx-requirements.txt delete mode 100644 ci/requirements/skore/python-3.14/scikit-learn-1.8/test-requirements.txt delete mode 100644 ci/requirements/skore/python-3.14/scikit-learn-1.8_and_mlflow-3/test-requirements.txt delete mode 100644 ci/requirements/skore/python-3.14/scikit-learn-1.8_and_pandas-2/test-requirements.txt delete mode 100644 docs/how-to/bump-minimal-python-version.md create mode 100644 pixi.lock create mode 100644 pixi.toml diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 9a95b7fccb..d96a88cf2d 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -8,19 +8,7 @@ updates: default-days: 14 commit-message: prefix: "chore(dependencies): GITHUB-ACTIONS" - - package-ecosystem: "pip" - directory: "/" - schedule: - interval: "weekly" - cooldown: - default-days: 14 - semver-patch-days: 7 - commit-message: - prefix: "chore(dependencies): PIP" - groups: - test-dependencies: - patterns: - - "*" - # It uses `ci/requirements/**/.python-version` to specify the python version used to - # update `ci/requirements/**/test-requirements.txt` +# Python deps are now resolved by pixi (see `pixi.toml` / `pixi.lock`). +# Dependabot has no native pixi ecosystem; refresh the lockfile with `pixi update` +# (manually or via a scheduled workflow). diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index c7ad3fb0a8..d71cf2b16d 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -17,8 +17,11 @@ name: pytest # packages. # # On (B), the workflow is started and runs jobs on all packages, no matter if they have -# modification. Indeed it's important to know on main, at each commit, if all workflows -# are green. +# modification. +# +# Environments are managed by `pixi` (see `pixi.toml` at the repo root). The matrix below +# enumerates the supported `(os, pixi environment)` pairs directly; keep this list in sync +# with the `[environments]` table in `pixi.toml`. on: pull_request: @@ -40,6 +43,7 @@ defaults: env: PACKAGES: '["skore"]' + PIXI_VERSION: v0.69.0 jobs: pytest-changes: @@ -61,7 +65,8 @@ jobs: echo "${PACKAGES}" | jq -r '.[]' | while read package; do >>${FILEPATH} echo "${package}: - '.github/workflows/pytest.yml' - - 'ci/requirements/${package}/**/test-requirements.txt' + - 'pixi.toml' + - 'pixi.lock' - '${package}/**'" done env: @@ -73,122 +78,32 @@ jobs: with: filters: ${{ runner.temp }}/filters.yaml - pytest-lockfiles: - runs-on: ubuntu-latest - needs: [pytest-changes] - if: ${{ (contains(fromJSON('["pull_request", "merge_group"]'), github.event_name)) && (needs.pytest-changes.outputs.modified-packages != '[]') }} - strategy: - fail-fast: false - matrix: - package: ${{ fromJSON(needs.pytest-changes.outputs.modified-packages) }} - permissions: - contents: read - steps: - - name: Checkout code - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 - with: - fetch-depth: 2 - - - name: Check lockfiles are not obsolete - run: | - set -eu - - # Check if `pyproject.toml` has changed in this pull-request - # ├── False - # │ └── Exit 0 - # └── True - # └── Check if lockfiles have changed in this pull-request - # ├── True - # │ └── Exit 0 - # └── False - # └── Recompile lockfiles and check if they have to change - # ├── False - # │ └── Exit 0 - # └── True - # └── Exit 1 - - changes=$(git diff --name-only HEAD^1 HEAD) - - if - (echo "${changes}" | grep -qE "${{ matrix.package }}/pyproject.toml") && - (echo "${changes}" | (! grep -qE "ci/requirements/${{ matrix.package }}/.*/test-requirements.txt")) - then - curl -LsSf https://astral.sh/uv/0.6.16/install.sh | sh - bash ci/pip-compile.sh --test-requirements - - if (git diff --name-only | grep -qE "ci/requirements/${{ matrix.package }}/.*/test-requirements.txt"); then - echo '::error title=${{ matrix.package }}-test-lockfiles::Lockfiles obsolete, please execute `$ bash ci/pip-compile.sh --test-requirements`' - exit 1 - fi - fi - - pytest-matrix: - needs: [pytest-changes] - if: ${{ (github.event_name == 'push') || (needs.pytest-changes.outputs.modified-packages != '[]') }} - runs-on: ubuntu-latest - outputs: - matrix: ${{ steps.set-matrix.outputs.matrix }} - steps: - - name: Checkout code - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 - - - name: Set matrix for pytest-test - id: set-matrix - shell: python - run: | - import os - import json - - import jsonschema - - schema = { - "type": "array", - "items": { - "type": "object", - "properties": { - "os": {"type": "string", "description": "Operating system to use."}, - "python": {"type": "string", "description": "Python version to use."}, - "dependencies": {"type": "array", "items": {"type": "string"}, "description": "Dependencies to override."}, - "coverage": {"type": "boolean", "description": "Whether to enable coverage."} - }, - "required": ["os", "python", "dependencies", "coverage"], - "additionalProperties": False, - } - } - - packages = json.loads(os.environ["PACKAGES"]) - matrix = [] - - for package in packages: - with open(f"{package}/supported-versions.json") as file: - combinations = json.load(file) - jsonschema.validate(instance=combinations, schema=schema) - - for combination in combinations: - # Escape dependencies to be used in filename, both in Linux and Windows - # - make a str based on the JSON array - # - replace `==` by `-` - # - remove all `.*` - escaped = "_and_".join(combination["dependencies"]) - escaped = escaped.replace("==", "-") - escaped = escaped.replace(".*", "") - - combination["dependencies"] = escaped - - matrix.append({"package": package} | combination) - - with open(os.environ["GITHUB_OUTPUT"], "a") as file: - file.write(f"matrix={json.dumps(matrix)}\n") - env: - PACKAGES: ${{ (github.event_name == 'push') && needs.pytest-changes.outputs.packages || needs.pytest-changes.outputs.modified-packages }} - pytest-test: - needs: [pytest-changes, pytest-matrix] + needs: [pytest-changes] if: ${{ (github.event_name == 'push') || (needs.pytest-changes.outputs.modified-packages != '[]') }} strategy: fail-fast: false matrix: - include: ${{ fromJSON(needs.pytest-matrix.outputs.matrix) }} + os: [ubuntu-latest, windows-latest] + environment: + - py311-sklearn15 + - py311-sklearn15-mlflow2 + - py311-sklearn18 + - py312-sklearn15 + - py312-sklearn18 + - py313-sklearn15 + - py313-sklearn18 + - py314-sklearn17 + - py314-sklearn18 + - py314-sklearn18-pandas2 + - py314-sklearn18-mlflow3 + exclude: + - os: windows-latest + environment: py314-sklearn18-pandas2 + include: + - os: ubuntu-latest + environment: py314-sklearn18 + coverage: true runs-on: ${{ matrix.os }} permissions: contents: read @@ -196,93 +111,43 @@ jobs: - name: Checkout code uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 - - name: Setup Python - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0 - id: setup-python + - name: Setup pixi + uses: prefix-dev/setup-pixi@5185adfbffb4bd703da3010310260805d89ebb11 # v0.9.6 with: - python-version: ${{ matrix.python }} - check-latest: True - cache: pip - - - name: Restore python-venv - uses: actions/cache/restore@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5 - id: cache-python-venv - with: - path: ${{ matrix.package }}/venv - key: >- - python-venv - -${{ matrix.os }} - -${{ steps.setup-python.outputs.python-version }} - -${{ hashFiles(format('ci/requirements/{0}/python-{1}/{2}/test-requirements.txt', matrix.package, matrix.python, matrix.dependencies)) }} - - - name: Setup python-venv - working-directory: ${{ matrix.package }}/ - run: | - set -eu - - # Ensure venv is created - python -m venv venv - - # Activate venv for each step depending on the OS - if [[ "${{ matrix.os }}" == "ubuntu-latest" ]]; then - echo "${GITHUB_WORKSPACE}/${{ matrix.package }}/venv/bin" >> ${GITHUB_PATH} - echo "VIRTUAL_ENV=${GITHUB_WORKSPACE}/${{ matrix.package }}/venv" >> ${GITHUB_ENV} - else - echo "${GITHUB_WORKSPACE}\\${{ matrix.package }}\\venv\\Scripts" >> ${GITHUB_PATH} - echo "VIRTUAL_ENV=${GITHUB_WORKSPACE}\\${{ matrix.package }}\\venv" >> ${GITHUB_ENV} - fi - - - name: Install dependencies in python-venv - working-directory: ${{ format('ci/requirements/{0}/python-{1}/{2}', matrix.package, matrix.python, matrix.dependencies) }} - if: steps.cache-python-venv.outputs.cache-hit != 'true' - run: | - python -m pip install --upgrade pip build - python -m pip install --requirement test-requirements.txt - - - name: Save python-venv - uses: actions/cache/save@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5 - if: steps.cache-python-venv.outputs.cache-hit != 'true' - with: - path: ${{ matrix.package }}/venv - key: ${{ steps.cache-python-venv.outputs.cache-primary-key }} - - - name: Build - working-directory: ${{ matrix.package }}/ - run: python -m build - - - name: Install - working-directory: ${{ matrix.package }}/dist/ - run: wheel=(*.whl); python -m pip install --force-reinstall --no-deps "${wheel}" + pixi-version: ${{ env.PIXI_VERSION }} + environments: ${{ matrix.environment }} + cache: true + locked: true - name: Test without coverage if: ${{ ! matrix.coverage }} timeout-minutes: 20 - working-directory: ${{ matrix.package }}/ - run: python -m pytest src/ tests/ --no-cov + working-directory: skore/ + run: pixi run -e ${{ matrix.environment }} --manifest-path ../pixi.toml pytest src/ tests/ --no-cov - name: Test with coverage if: ${{ matrix.coverage }} timeout-minutes: 20 - working-directory: ${{ matrix.package }}/ + working-directory: skore/ run: | mkdir coverage - python -m pytest src/ tests/ --junitxml=coverage/pytest.xml --cov-config=pyproject.toml --cov-report=xml:coverage/pytest-coverage.xml --cov - sed -i -E "s/filename=\"venv\/lib\/python[^/]*\/site-packages\/${PACKAGE//-/_}/filename=\"${PACKAGE}\/src\/${PACKAGE//-/_}/g" coverage/pytest-coverage.xml - env: - PACKAGE: ${{ matrix.package }} + pixi run -e ${{ matrix.environment }} --manifest-path ../pixi.toml \ + pytest src/ tests/ \ + --junitxml=coverage/pytest.xml \ + --cov-config=pyproject.toml \ + --cov-report=xml:coverage/pytest-coverage.xml \ + --cov - name: Upload coverage reports if: ${{ matrix.coverage && (github.event_name == 'pull_request') }} uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7.0.0 with: - name: ${{ matrix.package }}-coverage - path: ${{ matrix.package }}/coverage/ + name: skore-coverage + path: skore/coverage/ pytest: needs: - pytest-changes - - pytest-lockfiles - - pytest-matrix - pytest-test if: ${{ always() }} runs-on: ubuntu-latest diff --git a/.github/workflows/sphinx.yml b/.github/workflows/sphinx.yml index 37de827ec6..eaf5ce80e4 100644 --- a/.github/workflows/sphinx.yml +++ b/.github/workflows/sphinx.yml @@ -47,6 +47,9 @@ name: sphinx # ============== # # Only the 10 latest versions are listed in sphinx version-switcher to avoid overloading, but the bucket remains unchanged. +# +# The documentation environment is the `sphinx` pixi environment declared in +# `pixi.toml` (currently `py314 + sklearn 1.8 + skore[sphinx]` + graphviz). on: pull_request: @@ -67,9 +70,8 @@ defaults: shell: bash env: - PYTHON: '3.14' - SCIKIT_LEARN: '1.8' - LOCKFILE: 'ci/requirements/skore/python-3.14/scikit-learn-1.8/sphinx-requirements.txt' + PIXI_VERSION: v0.69.0 + PIXI_ENV: sphinx jobs: sphinx-changes: @@ -90,58 +92,14 @@ jobs: sphinx: - '.github/actions/sphinx/**' - '.github/workflows/sphinx.yml' - - 'ci/requirements/skore/**/sphinx-requirements.txt' + - 'pixi.toml' + - 'pixi.lock' - 'CHANGELOG.rst' - 'CONTRIBUTING.rst' - 'examples/**' - 'sphinx/**' - 'skore/**' - sphinx-lockfiles: - runs-on: ubuntu-latest - needs: [sphinx-changes] - if: ${{ (contains(fromJSON('["pull_request", "merge_group"]'), github.event_name)) && (needs.sphinx-changes.outputs.changes == 'true') }} - permissions: - contents: read - steps: - - name: Checkout code - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 - with: - fetch-depth: 2 - - - name: Check lockfiles are not obsolete - run: | - set -eu - - # Check if `pyproject.toml` has changed in this pull-request - # ├── False - # │ └── Exit 0 - # └── True - # └── Check if lockfiles have changed in this pull-request - # ├── True - # │ └── Exit 0 - # └── False - # └── Recompile lockfiles and check if they have to change - # ├── False - # │ └── Exit 0 - # └── True - # └── Exit 1 - - changes=$(git diff --name-only HEAD^1 HEAD) - - if - (echo "${changes}" | grep -qE "/pyproject.toml") && - (echo "${changes}" | (! grep -qE "${LOCKFILE}")) - then - curl -LsSf https://astral.sh/uv/0.6.16/install.sh | sh - bash ci/pip-compile.sh --sphinx-requirements - - if (git diff --name-only | grep -qE "${LOCKFILE}"); then - echo '::error title=skore-sphinx-lockfiles::Lockfiles obsolete, please execute `$ bash ci/pip-compile.sh --sphinx-requirements`' - exit 1 - fi - fi - sphinx-version: runs-on: ubuntu-latest needs: [sphinx-changes] @@ -187,63 +145,18 @@ jobs: with: lfs: 'true' - - name: Setup Python - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0 - id: setup-python + - name: Setup pixi + uses: prefix-dev/setup-pixi@5185adfbffb4bd703da3010310260805d89ebb11 # v0.9.6 with: - python-version: ${{ env.PYTHON }} - check-latest: True - cache: pip - - - name: Restore python-venv - uses: actions/cache/restore@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5 - id: cache-python-venv - with: - path: skore/venv - key: >- - python-venv - -ubuntu-latest - -${{ steps.setup-python.outputs.python-version }} - -${{ hashFiles(env.LOCKFILE) }} - - - name: Setup python-venv - working-directory: skore - run: | - set -eu - - # Ensure venv is created - python -m venv venv - - # Activate venv for each step - echo "${GITHUB_WORKSPACE}/skore/venv/bin" >> ${GITHUB_PATH} - echo "VIRTUAL_ENV=${GITHUB_WORKSPACE}/skore/venv" >> ${GITHUB_ENV} - - - name: Install dependencies in python-venv - if: steps.cache-python-venv.outputs.cache-hit != 'true' - run: | - set -eu - python -m pip install --upgrade pip build - python -m pip install --requirement "${LOCKFILE}" - - - name: Save python-venv - uses: actions/cache/save@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5 - if: steps.cache-python-venv.outputs.cache-hit != 'true' - with: - path: skore/venv - key: ${{ steps.cache-python-venv.outputs.cache-primary-key }} - - - name: Install graphviz - run: | - sudo apt-get install -y graphviz - - - name: Install all packages from local branch - run: | - python -m pip install --force-reinstall --no-deps skore/ + pixi-version: ${{ env.PIXI_VERSION }} + environments: ${{ env.PIXI_ENV }} + cache: true + locked: true - name: Build documentation working-directory: sphinx timeout-minutes: 60 - run: make html + run: pixi run -e ${{ env.PIXI_ENV }} --manifest-path ../pixi.toml make html env: SPHINX_VERSION: ${{ needs.sphinx-version.outputs.SPHINX_VERSION }} SPHINX_RELEASE: ${{ needs.sphinx-version.outputs.SPHINX_RELEASE }} @@ -441,7 +354,6 @@ jobs: sphinx: needs: - sphinx-changes - - sphinx-lockfiles - sphinx-version - sphinx-build - sphinx-deploy-html diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index d8a3b29723..bd46f9c3be 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -5,6 +5,7 @@ repos: - id: check-yaml - id: check-toml - id: check-added-large-files + exclude: ^pixi\.lock$ - id: check-merge-conflict - id: detect-private-key - id: end-of-file-fixer diff --git a/activate_dot.sh b/activate_dot.sh new file mode 100644 index 0000000000..fff6bbe12f --- /dev/null +++ b/activate_dot.sh @@ -0,0 +1 @@ +dot -c diff --git a/ci/pip-compile.sh b/ci/pip-compile.sh deleted file mode 100755 index 1e195cae11..0000000000 --- a/ci/pip-compile.sh +++ /dev/null @@ -1,108 +0,0 @@ -#!/usr/bin/env bash -# -# This script compiles all the `test-requirements.txt` files, based on combinations of -# `python` and `scikit-learn` versions. These combinations mirror those defined in the -# GitHub workflows. -# -# You can pass any `uv pip compile` parameter: -# -# $ bash pip-compile.sh --test-requirements --upgrade -# $ bash pip-compile.sh --sphinx-requirements --upgrade -# - -usage () { - >&2 echo "Usage:" - >&2 echo " $ bash pip-compile.sh --test-requirements [option...]" - >&2 echo " $ bash pip-compile.sh --sphinx-requirements [option...]" -} - -CWD=$(realpath $(dirname $0)) -TMPDIR=$(mktemp -d) -COMBINATIONS=() - -# Make sure that `TMPDIR` is removed on exit, whatever the signal -trap 'rm -rf ${TMPDIR}' 0 - -# Construct `COMBINATIONS` based on arguments -case $1 in - "--test-requirements") - while IFS= read -r combination; do - python=$(jq -rc '.python' <<< "${combination}") - dependencies=$(jq -rc '.dependencies' <<< "${combination}") - - COMBINATIONS+=("skore|test|${python}|${dependencies}") - done < <( - jq 'unique_by([.python, .dependencies]) | .[]' "${CWD}/../skore/supported-versions.json" -c - ) - - unset combination - unset python - unset dependencies - shift - ;; - "--sphinx-requirements") - COMBINATIONS+=('skore|sphinx|3.14|["scikit-learn==1.8.*"]') - shift - ;; - *) - >&2 echo -e "Error: Unknown OPTION \033[0;41m$1\033[0m" - usage - exit 1 - ;; -esac - -set -eu - -( - counter=1 - - # Move to `TMPDIR` to avoid absolute paths in requirements file - cd "${TMPDIR}" - - for combination in "${COMBINATIONS[@]}" - do - IFS="|" read -r PACKAGE EXTRA PYTHON DEPENDENCIES <<< "${combination}" - - # Escape dependencies to be used in filename, both in Linux and Windows: - # - make a str based on the JSON array - # - replace `==` by `-` - # - remove all `.*` - ESCAPED=$(jq 'join("_and_") | gsub("=="; "-") | gsub("\\.\\*"; "")' -rc <<< "${DEPENDENCIES}") - - echo "Generating ${PACKAGE} ${EXTRA}-requirements: python==${PYTHON} | ${DEPENDENCIES} (${counter}/${#COMBINATIONS[@]})" - - # Copy everything necessary to compile requirements in `TMPDIR` - mkdir -p "${TMPDIR}/${PACKAGE}"; cp "${CWD}/../${PACKAGE}/pyproject.toml" "${TMPDIR}/${PACKAGE}" - - # Force the dependencies by creating file overriding requirements - > "${PACKAGE}/overrides.txt" - - for dependency in $(jq '.[]' -rc <<< "${DEPENDENCIES}"); do - echo "${dependency}" >> "${PACKAGE}/overrides.txt" - done - - FILEPATH="${CWD}/requirements/${PACKAGE}/python-${PYTHON}/${ESCAPED}/${EXTRA}-requirements.txt" - - # Create the requirements file tree - mkdir -p $(dirname "${FILEPATH}") - - # Create the `.python-version` file used by `Dependabot` - echo "${PYTHON}" > "${CWD}/requirements/${PACKAGE}/python-${PYTHON}/.python-version" - - # Create the requirements file - uv python install --quiet "${PYTHON}" - uv pip compile \ - --python-platform "linux" \ - --quiet \ - --no-strip-extras \ - --no-header \ - --extra="${EXTRA}" \ - --override "${PACKAGE}/overrides.txt" \ - --python-version "${PYTHON}" \ - --output-file "${FILEPATH}" \ - "${PACKAGE}/pyproject.toml" \ - "${@:1}" - - let counter++ - done -) diff --git a/ci/requirements/skore/python-3.11/.python-version b/ci/requirements/skore/python-3.11/.python-version deleted file mode 100644 index 2c0733315e..0000000000 --- a/ci/requirements/skore/python-3.11/.python-version +++ /dev/null @@ -1 +0,0 @@ -3.11 diff --git a/ci/requirements/skore/python-3.11/scikit-learn-1.5/test-requirements.txt b/ci/requirements/skore/python-3.11/scikit-learn-1.5/test-requirements.txt deleted file mode 100644 index 53ac4a65a3..0000000000 --- a/ci/requirements/skore/python-3.11/scikit-learn-1.5/test-requirements.txt +++ /dev/null @@ -1,460 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==2.6.0 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.5.2 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -tomli==2.4.1 - # via coverage -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # aiosignal - # alembic - # anyio - # anywidget - # fastapi - # graphene - # ipython - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # optype - # pydantic - # pydantic-core - # sqlalchemy - # starlette - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.11/scikit-learn-1.5_and_mlflow-2/test-requirements.txt b/ci/requirements/skore/python-3.11/scikit-learn-1.5_and_mlflow-2/test-requirements.txt deleted file mode 100644 index 1068cc4370..0000000000 --- a/ci/requirements/skore/python-3.11/scikit-learn-1.5_and_mlflow-2/test-requirements.txt +++ /dev/null @@ -1,400 +0,0 @@ -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -blinker==1.9.0 - # via flask -cachetools==5.5.2 - # via mlflow-skinny -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==48.0.0 - # via google-auth -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via mlflow-skinny -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via mlflow -fonttools==4.63.0 - # via matplotlib -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==23.0.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests -importlib-metadata==8.9.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # mlflow - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown==3.10.2 - # via mlflow -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==2.22.5 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) -mlflow-skinny==2.22.5 - # via mlflow -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-sdk==1.42.0 - # via mlflow-skinny -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==24.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # plotly - # pytest -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prompt-toolkit==3.0.52 - # via ipython -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==19.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.5.2 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==1.0.0 - # via fastapi -threadpoolctl==3.6.0 - # via scikit-learn -tomli==2.4.1 - # via coverage -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # alembic - # anyio - # anywidget - # fastapi - # graphene - # ipython - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # optype - # pydantic - # pydantic-core - # sqlalchemy - # starlette - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via prompt-toolkit -werkzeug==3.1.8 - # via flask -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.11/scikit-learn-1.8/test-requirements.txt b/ci/requirements/skore/python-3.11/scikit-learn-1.8/test-requirements.txt deleted file mode 100644 index 0fd8b69a49..0000000000 --- a/ci/requirements/skore/python-3.11/scikit-learn-1.8/test-requirements.txt +++ /dev/null @@ -1,460 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==2.6.0 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.8.0 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -tomli==2.4.1 - # via coverage -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # aiosignal - # alembic - # anyio - # anywidget - # fastapi - # graphene - # ipython - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # optype - # pydantic - # pydantic-core - # sqlalchemy - # starlette - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.12/.python-version b/ci/requirements/skore/python-3.12/.python-version deleted file mode 100644 index e4fba21835..0000000000 --- a/ci/requirements/skore/python-3.12/.python-version +++ /dev/null @@ -1 +0,0 @@ -3.12 diff --git a/ci/requirements/skore/python-3.12/scikit-learn-1.5/test-requirements.txt b/ci/requirements/skore/python-3.12/scikit-learn-1.5/test-requirements.txt deleted file mode 100644 index 93d22fd82b..0000000000 --- a/ci/requirements/skore/python-3.12/scikit-learn-1.5/test-requirements.txt +++ /dev/null @@ -1,457 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==2.6.0 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.5.2 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # aiosignal - # alembic - # anyio - # anywidget - # fastapi - # graphene - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # optype - # pydantic - # pydantic-core - # sqlalchemy - # starlette - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.12/scikit-learn-1.8/test-requirements.txt b/ci/requirements/skore/python-3.12/scikit-learn-1.8/test-requirements.txt deleted file mode 100644 index b361fa01aa..0000000000 --- a/ci/requirements/skore/python-3.12/scikit-learn-1.8/test-requirements.txt +++ /dev/null @@ -1,457 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==2.6.0 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.8.0 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # aiosignal - # alembic - # anyio - # anywidget - # fastapi - # graphene - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # optype - # pydantic - # pydantic-core - # sqlalchemy - # starlette - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.13/.python-version b/ci/requirements/skore/python-3.13/.python-version deleted file mode 100644 index 24ee5b1be9..0000000000 --- a/ci/requirements/skore/python-3.13/.python-version +++ /dev/null @@ -1 +0,0 @@ -3.13 diff --git a/ci/requirements/skore/python-3.13/scikit-learn-1.5/test-requirements.txt b/ci/requirements/skore/python-3.13/scikit-learn-1.5/test-requirements.txt deleted file mode 100644 index 0581367347..0000000000 --- a/ci/requirements/skore/python-3.13/scikit-learn-1.5/test-requirements.txt +++ /dev/null @@ -1,453 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==2.6.0 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.5.2 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # alembic - # anywidget - # fastapi - # graphene - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # pydantic - # pydantic-core - # sqlalchemy - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.13/scikit-learn-1.8/test-requirements.txt b/ci/requirements/skore/python-3.13/scikit-learn-1.8/test-requirements.txt deleted file mode 100644 index a0593d346e..0000000000 --- a/ci/requirements/skore/python-3.13/scikit-learn-1.8/test-requirements.txt +++ /dev/null @@ -1,453 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==2.6.0 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.8.0 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # alembic - # anywidget - # fastapi - # graphene - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # pydantic - # pydantic-core - # sqlalchemy - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.14/.python-version b/ci/requirements/skore/python-3.14/.python-version deleted file mode 100644 index 6324d401a0..0000000000 --- a/ci/requirements/skore/python-3.14/.python-version +++ /dev/null @@ -1 +0,0 @@ -3.14 diff --git a/ci/requirements/skore/python-3.14/scikit-learn-1.7/test-requirements.txt b/ci/requirements/skore/python-3.14/scikit-learn-1.7/test-requirements.txt deleted file mode 100644 index 044c06a24c..0000000000 --- a/ci/requirements/skore/python-3.14/scikit-learn-1.7/test-requirements.txt +++ /dev/null @@ -1,453 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==2.6.0 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.7.2 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # alembic - # anywidget - # fastapi - # graphene - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # pydantic - # pydantic-core - # sqlalchemy - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.14/scikit-learn-1.8/sphinx-requirements.txt b/ci/requirements/skore/python-3.14/scikit-learn-1.8/sphinx-requirements.txt deleted file mode 100644 index 201c22bde8..0000000000 --- a/ci/requirements/skore/python-3.14/scikit-learn-1.8/sphinx-requirements.txt +++ /dev/null @@ -1,488 +0,0 @@ -accessible-pygments==0.0.5 - # via pydata-sphinx-theme -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alabaster==1.0.0 - # via sphinx -alembic==1.18.4 - # via mlflow -altair==6.1.0 - # via skore (skore/pyproject.toml) -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via - # aiohttp - # jsonschema - # referencing -babel==2.18.0 - # via - # pydata-sphinx-theme - # sphinx -beautifulsoup4==4.14.3 - # via pydata-sphinx-theme -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -charset-normalizer==3.4.7 - # via requests -choreographer==1.3.0 - # via kaleido -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -docker==7.1.0 - # via mlflow -docutils==0.21.2 - # via - # pydata-sphinx-theme - # sphinx - # sphinx-tabs -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via skore (skore/pyproject.toml) -huey==2.6.0 - # via mlflow -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -imagesize==2.0.0 - # via sphinx -importlib-metadata==9.0.0 - # via mlflow-skinny -ipython==9.13.0 - # via ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # altair - # flask - # skrub - # sphinx -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jsonschema==4.26.0 - # via altair -jsonschema-specifications==2025.9.1 - # via jsonschema -jupyterlab-widgets==3.0.16 - # via ipywidgets -kaleido==1.3.0 - # via skore (skore/pyproject.toml) -kiwisolver==1.5.0 - # via matplotlib -logistro==2.0.1 - # via - # choreographer - # kaleido -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via - # altair - # plotly -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub - # xgboost-cpu -numpydoc==1.10.0 - # via skore (skore/pyproject.toml) -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -orjson==3.11.9 - # via - # skore (skore/pyproject.toml) - # kaleido -packaging==26.2 - # via - # altair - # gunicorn - # kaleido - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # skops - # sphinx - # sphinx-autosummary-accessors -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via - # matplotlib - # sphinx-gallery -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # choreographer -plotly==6.7.0 - # via skore (skore/pyproject.toml) -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydata-sphinx-theme==0.18.0 - # via skore (skore/pyproject.toml) -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # accessible-pygments - # ipython - # ipython-pygments-lexers - # pydata-sphinx-theme - # rich - # sphinx - # sphinx-tabs -pyparsing==3.3.2 - # via - # matplotlib - # pydot -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via mlflow-skinny -referencing==0.37.0 - # via - # jsonschema - # jsonschema-specifications -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub - # sphinx -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -rpds-py==0.30.0 - # via - # jsonschema - # referencing -scikit-learn==1.8.0 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub - # xgboost-cpu -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -simplejson==4.1.1 - # via choreographer -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -snowballstemmer==3.0.1 - # via sphinx -soupsieve==2.8.3 - # via beautifulsoup4 -sphinx==8.1.3 - # via - # skore (skore/pyproject.toml) - # numpydoc - # pydata-sphinx-theme - # sphinx-autosummary-accessors - # sphinx-copybutton - # sphinx-design - # sphinx-gallery - # sphinx-issues - # sphinx-tabs -sphinx-autosummary-accessors==2025.3.1 - # via skore (skore/pyproject.toml) -sphinx-copybutton==0.5.2 - # via skore (skore/pyproject.toml) -sphinx-design==0.7.0 - # via skore (skore/pyproject.toml) -sphinx-gallery==0.21.0 - # via skore (skore/pyproject.toml) -sphinx-issues==6.0.0 - # via skore (skore/pyproject.toml) -sphinx-tabs==3.5.0 - # via skore (skore/pyproject.toml) -sphinxcontrib-applehelp==2.0.0 - # via sphinx -sphinxcontrib-devhelp==2.0.0 - # via sphinx -sphinxcontrib-htmlhelp==2.1.0 - # via sphinx -sphinxcontrib-jsmath==1.0.1 - # via sphinx -sphinxcontrib-qthelp==2.0.0 - # via sphinx -sphinxcontrib-serializinghtml==2.0.0 - # via sphinx -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # alembic - # altair - # beautifulsoup4 - # fastapi - # graphene - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # pydantic - # pydantic-core - # pydata-sphinx-theme - # sqlalchemy - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xgboost-cpu==3.2.0 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.14/scikit-learn-1.8/test-requirements.txt b/ci/requirements/skore/python-3.14/scikit-learn-1.8/test-requirements.txt deleted file mode 100644 index a0593d346e..0000000000 --- a/ci/requirements/skore/python-3.14/scikit-learn-1.8/test-requirements.txt +++ /dev/null @@ -1,453 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==2.6.0 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.8.0 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # alembic - # anywidget - # fastapi - # graphene - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # pydantic - # pydantic-core - # sqlalchemy - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.14/scikit-learn-1.8_and_mlflow-3/test-requirements.txt b/ci/requirements/skore/python-3.14/scikit-learn-1.8_and_mlflow-3/test-requirements.txt deleted file mode 100644 index 0b84e6bff3..0000000000 --- a/ci/requirements/skore/python-3.14/scikit-learn-1.8_and_mlflow-3/test-requirements.txt +++ /dev/null @@ -1,455 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==2.6.0 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.8.0 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # alembic - # anywidget - # fastapi - # graphene - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # pydantic - # pydantic-core - # sqlalchemy - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/ci/requirements/skore/python-3.14/scikit-learn-1.8_and_pandas-2/test-requirements.txt b/ci/requirements/skore/python-3.14/scikit-learn-1.8_and_pandas-2/test-requirements.txt deleted file mode 100644 index 1c22dfffc5..0000000000 --- a/ci/requirements/skore/python-3.14/scikit-learn-1.8_and_pandas-2/test-requirements.txt +++ /dev/null @@ -1,454 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.13.5 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.3 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.0 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.0 - # via pytest-cov -cryptography==46.0.7 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.110.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.0 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.1 - # via mlflow-skinny -filelock==3.29.0 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==25.3.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==2.6.0 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.15 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.13.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.12.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.12.0 - # via mlflow -mlflow-tracing==3.12.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.21.2 - # via plotly -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.0 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b0 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.9.6 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.7.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.40.1 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.40.1 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==23.0.1 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.3.1 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.8.0 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.4 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.49 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==0.52.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -traitlets==5.15.0 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # alembic - # anywidget - # fastapi - # graphene - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # pydantic - # pydantic-core - # sqlalchemy - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.47.0 - # via mlflow-skinny -virtualenv==21.3.3 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/docs/how-to/bump-minimal-python-version.md b/docs/how-to/bump-minimal-python-version.md deleted file mode 100644 index 8d4752571c..0000000000 --- a/docs/how-to/bump-minimal-python-version.md +++ /dev/null @@ -1,11 +0,0 @@ -# How to bump the minimum required version of Python - -- Update `requires-python` in `pyproject.toml` -- Update classifiers in `pyproject.toml` -- Remove mentions from `supported-versions.json` -- Remove `ci/requirements/skore/python-` -- Update `README.md` - - Badge - - "You need Python>=3.x" -- Update `CONTRIBUTING.rst` - - "You will need ``python >=3.x``" diff --git a/pixi.lock b/pixi.lock new file mode 100644 index 0000000000..bb53a02bf1 --- /dev/null +++ b/pixi.lock @@ -0,0 +1,30356 @@ +version: 7 +platforms: +- name: linux-64 +- name: osx-arm64 +- name: win-64 +environments: + default: + channels: + - url: https://prefix.dev/conda-forge/ + packages: {} + py311-sklearn15: + channels: + - url: https://prefix.dev/conda-forge/ + indexes: + - https://pypi.org/simple + packages: + linux-64: + - conda: https://prefix.dev/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda + - conda: https://prefix.dev/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda + - conda: https://prefix.dev/conda-forge/linux-64/ld_impl_linux-64-2.45.1-default_hbd61a6d_102.conda + - 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pytest ; extra == 'test-lts-cpu' + - pytest-cov ; extra == 'test-lts-cpu' + - pytest-order ; extra == 'test-lts-cpu' + - pytest-randomly ; extra == 'test-lts-cpu' + - pytest-xdist ; extra == 'test-lts-cpu' + - respx ; extra == 'test-lts-cpu' + - rich[jupyter]>=14.2 ; extra == 'test-lts-cpu' + - scipy ; extra == 'test-lts-cpu' + - scipy-stubs ; extra == 'test-lts-cpu' + - xdoctest ; extra == 'test-lts-cpu' + requires_python: '>=3.11' diff --git a/pixi.toml b/pixi.toml new file mode 100644 index 0000000000..1a6f4dcb45 --- /dev/null +++ b/pixi.toml @@ -0,0 +1,68 @@ +[workspace] +name = "skore" +authors = ["skore developers "] +channels = ["https://prefix.dev/conda-forge"] +platforms = ["linux-64", "win-64", "osx-arm64"] + +[feature.py311.dependencies] +python = "3.11.*" + +[feature.py312.dependencies] +python = "3.12.*" + +[feature.py313.dependencies] +python = "3.13.*" + +[feature.py314.dependencies] +python = "3.14.*" + +[feature.sklearn15.dependencies] +scikit-learn = "1.5.*" + +[feature.sklearn17.dependencies] +scikit-learn = "1.7.*" + +[feature.sklearn18.dependencies] +scikit-learn = "1.8.*" + +[feature.mlflow2.dependencies] +mlflow = "2.*" + +[feature.mlflow3.dependencies] +mlflow = "3.*" + +[feature.pandas2.dependencies] +pandas = "2.*" + +[feature.test.pypi-dependencies] +skore = { path = "skore", editable = true, extras = ["test"] } + +[feature.test.tasks] +tests = { cmd = "pytest -vsl --cov=skore --cov-report=xml --cov-report=term-missing -n auto src/ tests/", cwd = "skore" } +lint = "pre-commit install && pre-commit run -v --all-files --show-diff-on-failure" + +[feature.sphinx.dependencies] +graphviz = "*" + +[feature.sphinx.pypi-dependencies] +skore = { path = "skore", editable = true, extras = ["sphinx"] } + +[feature.sphinx.tasks] +docs = { cmd = "make html", cwd = "sphinx" } + +[feature.sphinx.target.osx-arm64.activation] +scripts = ["activate_dot.sh"] + +[environments] +py311-sklearn15 = ["py311", "sklearn15", "test"] +py311-sklearn15-mlflow2 = ["py311", "sklearn15", "mlflow2", "test"] +py311-sklearn18 = ["py311", "sklearn18", "test"] +py312-sklearn15 = ["py312", "sklearn15", "test"] +py312-sklearn18 = ["py312", "sklearn18", "test"] +py313-sklearn15 = ["py313", "sklearn15", "test"] +py313-sklearn18 = ["py313", "sklearn18", "test"] +py314-sklearn17 = ["py314", "sklearn17", "test"] +py314-sklearn18 = ["py314", "sklearn18", "test"] +py314-sklearn18-pandas2 = ["py314", "sklearn18", "pandas2", "test"] +py314-sklearn18-mlflow3 = ["py314", "sklearn18", "mlflow3", "test"] +sphinx = ["py314", "sklearn18", "sphinx"] From 6cac458b45fedeb3419551a29b2e48320c7652c5 Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Thu, 21 May 2026 14:57:25 +0200 Subject: [PATCH 02/12] add codecov --- .github/workflows/lint.yml | 19 +- .../workflows/pr-display-code-coverage.yml | 55 --- .github/workflows/pytest.yml | 32 +- codecov.yml | 28 ++ pixi.lock | 447 ++++++++++++++++-- pixi.toml | 9 +- 6 files changed, 460 insertions(+), 130 deletions(-) delete mode 100644 .github/workflows/pr-display-code-coverage.yml create mode 100644 codecov.yml diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml index e450c28a98..08ba55a13a 100644 --- a/.github/workflows/lint.yml +++ b/.github/workflows/lint.yml @@ -19,6 +19,10 @@ defaults: run: shell: "bash" +env: + PIXI_VERSION: v0.69.0 + PIXI_ENV: lint + jobs: lint: runs-on: ubuntu-latest @@ -26,14 +30,13 @@ jobs: - name: Checkout code uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 - - name: Setup Python - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0 + - name: Setup pixi + uses: prefix-dev/setup-pixi@5185adfbffb4bd703da3010310260805d89ebb11 # v0.9.6 with: - python-version: "3.12" - cache: pip - - - name: Install dependencies - run: python -m pip install --upgrade pip pre-commit + pixi-version: ${{ env.PIXI_VERSION }} + environments: ${{ env.PIXI_ENV }} + cache: true + locked: true - name: Lint - run: pre-commit run --all-files + run: pixi run -e ${{ env.PIXI_ENV }} lint diff --git a/.github/workflows/pr-display-code-coverage.yml b/.github/workflows/pr-display-code-coverage.yml deleted file mode 100644 index 7d29e285eb..0000000000 --- a/.github/workflows/pr-display-code-coverage.yml +++ /dev/null @@ -1,55 +0,0 @@ -name: pr-display-code-coverage - -on: - workflow_run: - workflows: [pytest] - types: [completed] - -concurrency: - group: ${{ github.workflow }}-${{ github.ref }} - cancel-in-progress: true - -permissions: {} - -jobs: - pr-display-code-coverage: - runs-on: ubuntu-latest - if: ${{ github.event.workflow_run.event == 'pull_request' && github.event.workflow_run.conclusion == 'success' }} - strategy: - fail-fast: false - matrix: - package: ["skore"] - permissions: - actions: read - contents: read - pull-requests: write - steps: - - name: Checkout code - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 - with: - sparse-checkout: .github - - - name: Download coverage reports - id: download-coverage-reports - continue-on-error: True - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1 - with: - name: ${{ matrix.package }}-coverage - path: coverage/ - github-token: ${{ github.token }} - run-id: ${{ github.event.workflow_run.id }} - - - name: Acquire PR context - if: ${{ steps.download-coverage-reports.outcome == 'success' }} - id: acquire-pr-context - uses: ./.github/actions/workflow-run/context - - - name: Display coverage reports - if: ${{ steps.download-coverage-reports.outcome == 'success' }} - uses: MishaKav/pytest-coverage-comment@287292879eaaff04116f36d3eb1a670f6e5df1a4 # v1.7.1 - with: - issue-number: ${{ steps.acquire-pr-context.outputs.pr-number }} - pytest-xml-coverage-path: coverage/pytest-coverage.xml - junitxml-path: coverage/pytest.xml - title: Coverage Report for `${{ matrix.package }}/` - unique-id-for-comment: ${{ matrix.package }} diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index d71cf2b16d..97ce39c6dd 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -5,7 +5,7 @@ name: pytest # # The workflow runs `pytest` jobs on all the repository packages, identified by the JSON # list `env.PACKAGES`. If you want to run this workflow on a new package, you only have -# to add its name in the above list, and in the `pr-display-code-coverage.yml` workflow. +# to add its name in the above list. # # It's important to notice that only one workflow is triggered for all packages. # @@ -122,28 +122,24 @@ jobs: - name: Test without coverage if: ${{ ! matrix.coverage }} timeout-minutes: 20 - working-directory: skore/ - run: pixi run -e ${{ matrix.environment }} --manifest-path ../pixi.toml pytest src/ tests/ --no-cov + run: pixi run -e ${{ matrix.environment }} tests - name: Test with coverage if: ${{ matrix.coverage }} timeout-minutes: 20 - working-directory: skore/ - run: | - mkdir coverage - pixi run -e ${{ matrix.environment }} --manifest-path ../pixi.toml \ - pytest src/ tests/ \ - --junitxml=coverage/pytest.xml \ - --cov-config=pyproject.toml \ - --cov-report=xml:coverage/pytest-coverage.xml \ - --cov - - - name: Upload coverage reports - if: ${{ matrix.coverage && (github.event_name == 'pull_request') }} - uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7.0.0 + run: pixi run -e ${{ matrix.environment }} tests-coverage + + - name: Upload coverage to Codecov + if: ${{ matrix.coverage && !cancelled() }} + uses: codecov/codecov-action@e79a6962e0d4c0c17b229090214935d2e33f8354 # v6.0.1 + with: + slug: probabl-ai/skore + + - name: Upload test results to Codecov + if: ${{ matrix.coverage && !cancelled() }} + uses: codecov/test-results-action@0fa95f0e1eeaafde2c782583b36b28ad0d8c77d3 # v1.2.1 with: - name: skore-coverage - path: skore/coverage/ + slug: probabl-ai/skore pytest: needs: diff --git a/codecov.yml b/codecov.yml new file mode 100644 index 0000000000..90c9115ae2 --- /dev/null +++ b/codecov.yml @@ -0,0 +1,28 @@ +# similar to scikit-learn .codecov.yml +comment: false + +coverage: + wait_for_ci: true + + status: + project: + default: + # Commits pushed to the main branch should not make the overall + # project coverage decrease by more than 1%: + target: auto + threshold: 1% + patch: + default: + # Be tolerant on slight code coverage diff on PRs to limit + # noisy red coverage status on GitHub PRs. + # Note The coverage stats are still uploaded + # to codecov so that PR reviewers can see uncovered lines + # in the GitHub diff if they install the codecov browser + # extension: + # https://github.com/codecov/browser-extension + target: auto + threshold: 1% + +ignore: + - "skore/hatch/**" # build-time metadata hooks, not imported at runtime + - "**/_externals/**" # vendored external code (already in tool.coverage omit) diff --git a/pixi.lock b/pixi.lock index bb53a02bf1..b1225b6831 100644 --- a/pixi.lock +++ b/pixi.lock @@ -8,6 +8,122 @@ environments: channels: - url: https://prefix.dev/conda-forge/ packages: {} + lint: + channels: + - url: https://prefix.dev/conda-forge/ + packages: + linux-64: + - conda: https://prefix.dev/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda + - conda: https://prefix.dev/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda + - conda: https://prefix.dev/conda-forge/linux-64/cffi-2.0.0-py312h460c074_1.conda + - conda: https://prefix.dev/conda-forge/linux-64/ld_impl_linux-64-2.45.1-default_hbd61a6d_102.conda + - conda: https://prefix.dev/conda-forge/linux-64/libexpat-2.8.1-hecca717_0.conda + - conda: https://prefix.dev/conda-forge/linux-64/libffi-3.5.2-h3435931_0.conda + - conda: https://prefix.dev/conda-forge/linux-64/libgcc-15.2.0-he0feb66_19.conda + - 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python >=3.14,<3.15.0a0 - python_abi 3.14.* *_cp314 @@ -23246,12 +23598,11 @@ packages: - vc >=14.3,<15 - vc14_runtime >=14.44.35208 license: BSD-2-Clause - license_family: BSD purls: - - pkg:pypi/wrapt?source=hash-mapping + - pkg:pypi/wrapt?source=compressed-mapping run_exports: {} - size: 86073 - timestamp: 1772794899504 + size: 115040 + timestamp: 1779359232350 - conda: https://prefix.dev/conda-forge/win-64/xorg-libice-1.1.2-h0e40799_0.conda sha256: bf1d34142b1bf9b5a4eed96bcc77bc4364c0e191405fd30d2f9b48a04d783fd3 md5: 105cb93a47df9c548e88048dc9cbdbc9 diff --git a/pixi.toml b/pixi.toml index 1a6f4dcb45..52e298a32b 100644 --- a/pixi.toml +++ b/pixi.toml @@ -38,7 +38,13 @@ pandas = "2.*" skore = { path = "skore", editable = true, extras = ["test"] } [feature.test.tasks] -tests = { cmd = "pytest -vsl --cov=skore --cov-report=xml --cov-report=term-missing -n auto src/ tests/", cwd = "skore" } +tests = { cmd = "pytest src/ tests/ --no-cov", cwd = "skore" } +tests-coverage = { cmd = "pytest src/ tests/ --junitxml=coverage/pytest.xml --cov-config=pyproject.toml --cov-report=xml:coverage/pytest-coverage.xml --cov", cwd = "skore" } + +[feature.lint.dependencies] +pre-commit = "*" + +[feature.lint.tasks] lint = "pre-commit install && pre-commit run -v --all-files --show-diff-on-failure" [feature.sphinx.dependencies] @@ -66,3 +72,4 @@ py314-sklearn18 = ["py314", "sklearn18", "test"] py314-sklearn18-pandas2 = ["py314", "sklearn18", "pandas2", "test"] py314-sklearn18-mlflow3 = ["py314", "sklearn18", "mlflow3", "test"] sphinx = ["py314", "sklearn18", "sphinx"] +lint = ["py312", "lint"] From 1539dc85052340ce392fa191c4219c5044fc87d0 Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Thu, 21 May 2026 15:25:51 +0200 Subject: [PATCH 03/12] fix --- .github/workflows/pytest.yml | 4 ++++ codecov.yml | 6 ++++-- 2 files changed, 8 insertions(+), 2 deletions(-) diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index 97ce39c6dd..e8d7521162 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -134,12 +134,16 @@ jobs: uses: codecov/codecov-action@e79a6962e0d4c0c17b229090214935d2e33f8354 # v6.0.1 with: slug: probabl-ai/skore + files: skore/coverage/pytest-coverage.xml + disable_search: true - name: Upload test results to Codecov if: ${{ matrix.coverage && !cancelled() }} uses: codecov/test-results-action@0fa95f0e1eeaafde2c782583b36b28ad0d8c77d3 # v1.2.1 with: slug: probabl-ai/skore + files: skore/coverage/pytest.xml + disable_search: true pytest: needs: diff --git a/codecov.yml b/codecov.yml index 90c9115ae2..2032b8ff95 100644 --- a/codecov.yml +++ b/codecov.yml @@ -1,9 +1,11 @@ # similar to scikit-learn .codecov.yml comment: false -coverage: - wait_for_ci: true +codecov: + notify: + wait_for_ci: true +coverage: status: project: default: From 0f47346f5b7a55c1015ee9986f7db6de54f11194 Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Thu, 21 May 2026 18:22:20 +0200 Subject: [PATCH 04/12] fix token --- .github/workflows/pytest.yml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index e8d7521162..d8289b2617 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -133,17 +133,23 @@ jobs: if: ${{ matrix.coverage && !cancelled() }} uses: codecov/codecov-action@e79a6962e0d4c0c17b229090214935d2e33f8354 # v6.0.1 with: + token: ${{ secrets.CODECOV_TOKEN }} slug: probabl-ai/skore files: skore/coverage/pytest-coverage.xml disable_search: true + fail_ci_if_error: true + verbose: true - name: Upload test results to Codecov if: ${{ matrix.coverage && !cancelled() }} uses: codecov/test-results-action@0fa95f0e1eeaafde2c782583b36b28ad0d8c77d3 # v1.2.1 with: + token: ${{ secrets.CODECOV_TOKEN }} slug: probabl-ai/skore files: skore/coverage/pytest.xml disable_search: true + fail_ci_if_error: true + verbose: true pytest: needs: From cd65c9a6b7931dfd9def0f58806b4d6bf476cd0c Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Thu, 21 May 2026 19:06:39 +0200 Subject: [PATCH 05/12] fix coverage (maybe) --- .github/workflows/pytest.yml | 13 ++++++++----- pixi.toml | 3 ++- 2 files changed, 10 insertions(+), 6 deletions(-) diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index d8289b2617..ce6769a599 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -127,18 +127,23 @@ jobs: - name: Test with coverage if: ${{ matrix.coverage }} timeout-minutes: 20 + env: + COVERAGE_PROCESS_START: ${{ github.workspace }}/skore/pyproject.toml + COVERAGE_CORE: sysmon run: pixi run -e ${{ matrix.environment }} tests-coverage + - name: Combine coverage reports from parallel test runners + if: ${{ matrix.coverage && !cancelled() }} + run: pixi run -e ${{ matrix.environment }} coverage-combine + - name: Upload coverage to Codecov if: ${{ matrix.coverage && !cancelled() }} uses: codecov/codecov-action@e79a6962e0d4c0c17b229090214935d2e33f8354 # v6.0.1 with: token: ${{ secrets.CODECOV_TOKEN }} slug: probabl-ai/skore - files: skore/coverage/pytest-coverage.xml + files: skore/coverage/coverage.xml disable_search: true - fail_ci_if_error: true - verbose: true - name: Upload test results to Codecov if: ${{ matrix.coverage && !cancelled() }} @@ -148,8 +153,6 @@ jobs: slug: probabl-ai/skore files: skore/coverage/pytest.xml disable_search: true - fail_ci_if_error: true - verbose: true pytest: needs: diff --git a/pixi.toml b/pixi.toml index 52e298a32b..a6fb161a23 100644 --- a/pixi.toml +++ b/pixi.toml @@ -39,7 +39,8 @@ skore = { path = "skore", editable = true, extras = ["test"] } [feature.test.tasks] tests = { cmd = "pytest src/ tests/ --no-cov", cwd = "skore" } -tests-coverage = { cmd = "pytest src/ tests/ --junitxml=coverage/pytest.xml --cov-config=pyproject.toml --cov-report=xml:coverage/pytest-coverage.xml --cov", cwd = "skore" } +tests-coverage = { cmd = "pytest src/ tests/ --showlocals --durations=20 --junitxml=coverage/pytest.xml -o junit_family=legacy --cov-config=pyproject.toml --cov=skore --cov-report=", cwd = "skore" } +coverage-combine = { cmd = "coverage combine --append && coverage xml -o coverage/coverage.xml", cwd = "skore" } [feature.lint.dependencies] pre-commit = "*" From 6866200c0429f0760bfe6731bfbcab5688b518c6 Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Thu, 21 May 2026 23:42:45 +0200 Subject: [PATCH 06/12] really fix coverage this time --- .gitignore | 1 + pixi.toml | 2 +- skore/pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 2 deletions(-) diff --git a/.gitignore b/.gitignore index 934f297f8d..1a640f3b3b 100644 --- a/.gitignore +++ b/.gitignore @@ -52,6 +52,7 @@ coverage.xml .pytest_cache/ cover/ pytest-coverage.txt +skore/coverage/ # Translations *.mo diff --git a/pixi.toml b/pixi.toml index a6fb161a23..ee982dc144 100644 --- a/pixi.toml +++ b/pixi.toml @@ -40,7 +40,7 @@ skore = { path = "skore", editable = true, extras = ["test"] } [feature.test.tasks] tests = { cmd = "pytest src/ tests/ --no-cov", cwd = "skore" } tests-coverage = { cmd = "pytest src/ tests/ --showlocals --durations=20 --junitxml=coverage/pytest.xml -o junit_family=legacy --cov-config=pyproject.toml --cov=skore --cov-report=", cwd = "skore" } -coverage-combine = { cmd = "coverage combine --append && coverage xml -o coverage/coverage.xml", cwd = "skore" } +coverage-combine = { cmd = "(coverage combine --append || true) && coverage xml -o coverage/coverage.xml", cwd = "skore" } [feature.lint.dependencies] pre-commit = "*" diff --git a/skore/pyproject.toml b/skore/pyproject.toml index 092acd295a..5485d47cc1 100644 --- a/skore/pyproject.toml +++ b/skore/pyproject.toml @@ -148,7 +148,7 @@ concurrency = ["thread", "multiprocessing"] parallel = true [tool.coverage.report] -omit = ["*/_externals/*", "src/*", "tests/*"] +omit = ["*/_externals/*"] show_missing = true exclude_also = [ "raise NotImplementedError", From fc39150146cfb9019039e7ab34b3420d6596c41c Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Mon, 25 May 2026 19:08:52 +0200 Subject: [PATCH 07/12] add scripts/ folder --- pixi.toml | 2 +- activate_dot.sh => scripts/activate_dot.sh | 0 2 files changed, 1 insertion(+), 1 deletion(-) rename activate_dot.sh => scripts/activate_dot.sh (100%) diff --git a/pixi.toml b/pixi.toml index ee982dc144..be9550a0f8 100644 --- a/pixi.toml +++ b/pixi.toml @@ -58,7 +58,7 @@ skore = { path = "skore", editable = true, extras = ["sphinx"] } docs = { cmd = "make html", cwd = "sphinx" } [feature.sphinx.target.osx-arm64.activation] -scripts = ["activate_dot.sh"] +scripts = ["scripts/activate_dot.sh"] [environments] py311-sklearn15 = ["py311", "sklearn15", "test"] diff --git a/activate_dot.sh b/scripts/activate_dot.sh similarity index 100% rename from activate_dot.sh rename to scripts/activate_dot.sh From 5551fcecce962db94e0921a72e2eb178f7d76446 Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Thu, 4 Jun 2026 23:08:28 +0200 Subject: [PATCH 08/12] _ --- .github/workflows/pytest.yml | 11 + .github/workflows/sphinx.yml | 12 + .gitignore | 2 + pixi.lock | 10632 ++++++++++++++++----------------- pixi.toml | 27 +- 5 files changed, 5289 insertions(+), 5395 deletions(-) diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index ce6769a599..555905391c 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -119,6 +119,17 @@ jobs: cache: true locked: true + # Cache the datasets downloaded by `skrub.datasets.fetch_*` (default `~/skrub_data`) + # to avoid re-downloading them on every run. The `github.run_id` in the key combined + # with the prefix `restore-keys` keeps the cache fresh while accumulating new datasets. + - name: Cache fetched datasets + uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 + with: + path: ~/skrub_data + key: skrub-data-${{ runner.os }}-${{ github.run_id }} + restore-keys: | + skrub-data-${{ runner.os }}- + - name: Test without coverage if: ${{ ! matrix.coverage }} timeout-minutes: 20 diff --git a/.github/workflows/sphinx.yml b/.github/workflows/sphinx.yml index eaf5ce80e4..2641834dcc 100644 --- a/.github/workflows/sphinx.yml +++ b/.github/workflows/sphinx.yml @@ -153,6 +153,18 @@ jobs: cache: true locked: true + # Cache the datasets downloaded by `skrub.datasets.fetch_*` (default `~/skrub_data`) + # to avoid re-downloading them on every documentation build. The `github.run_id` in + # the key combined with the prefix `restore-keys` keeps the cache fresh while + # accumulating new datasets. + - name: Cache fetched datasets + uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 + with: + path: ~/skrub_data + key: skrub-data-${{ runner.os }}-${{ github.run_id }} + restore-keys: | + skrub-data-${{ runner.os }}- + - name: Build documentation working-directory: sphinx timeout-minutes: 60 diff --git a/.gitignore b/.gitignore index 9e48260310..f37103fc06 100644 --- a/.gitignore +++ b/.gitignore @@ -208,3 +208,5 @@ mlflow.db mlruns .claude + +.pixi diff --git a/pixi.lock b/pixi.lock index b1225b6831..a5f5c53b60 100644 --- a/pixi.lock +++ b/pixi.lock @@ -24,7 +24,7 @@ environments: - conda: https://prefix.dev/conda-forge/linux-64/libgomp-15.2.0-he0feb66_19.conda - conda: https://prefix.dev/conda-forge/linux-64/liblzma-5.8.3-hb03c661_0.conda - conda: https://prefix.dev/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda - - conda: https://prefix.dev/conda-forge/linux-64/libsqlite-3.53.1-h0c1763c_0.conda + - 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fiona<=1.9.6 ; python_full_version < '3.9' and extra == 'dev-optional' + - geopandas ; extra == 'dev-optional' + - inflect ; extra == 'dev-optional' + - jupyterlab ; extra == 'dev-optional' + - kaleido>=1.3.0 ; extra == 'dev-optional' + - numpy>=1.22 ; extra == 'dev-optional' + - orjson ; extra == 'dev-optional' + - pandas ; extra == 'dev-optional' + - pdfrw ; extra == 'dev-optional' + - pillow ; extra == 'dev-optional' + - plotly-geo ; extra == 'dev-optional' + - polars[timezone] ; extra == 'dev-optional' + - pyarrow ; extra == 'dev-optional' + - pyshp ; extra == 'dev-optional' + - pytest ; extra == 'dev-optional' + - pytz ; extra == 'dev-optional' + - requests ; extra == 'dev-optional' + - ruff==0.11.12 ; extra == 'dev-optional' + - scikit-image ; extra == 'dev-optional' + - scipy ; extra == 'dev-optional' + - shapely ; extra == 'dev-optional' + - statsmodels ; extra == 'dev-optional' + - vaex ; python_full_version < '3.10' and extra == 'dev-optional' + - xarray ; extra == 'dev-optional' + - numpy>=1,<2 ; extra == 'dev-pandas1' + - pandas>=1,<2 ; extra == 'dev-pandas1' + - setuptools<82 ; extra == 'dev-pandas1' + - pandas>=2,<3 ; extra == 'dev-pandas2' + - pandas>=3 ; python_full_version >= '3.11' and extra == 'dev-pandas3' + - numpy>=1.22 ; extra == 'express' + - kaleido>=1.3.0 ; extra == 'kaleido' + requires_python: '>=3.8' - pypi: https://files.pythonhosted.org/packages/fa/07/330e3a0dda4c404d6da83b327270906e9654a24f6c546dc886a0eb0ffb23/charset_normalizer-3.4.7-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl name: charset-normalizer version: 3.4.7 @@ -30495,6 +30363,11 @@ packages: - frozenlist>=1.1.0 - typing-extensions>=4.2 ; python_full_version < '3.13' requires_python: '>=3.9' +- pypi: https://files.pythonhosted.org/packages/fb/80/65a5aa96c155e611d1ed844e4e1f57f3e36b021f396d9f8585d756e6b90d/rpds_py-2026.5.1-cp314-cp314-win_amd64.whl + name: rpds-py + version: 2026.5.1 + sha256: cef8ac28d26f4dda3533060c20fbf80a325458fa9fd23ea72a73cdfa8e978838 + requires_python: '>=3.11' - pypi: https://files.pythonhosted.org/packages/fc/b6/6b8de4c0a7d7ab3004c439c80c5c1e0a3e8d78bbae19379b01960383d9e5/pydantic_core-2.46.4-cp314-cp314-win_amd64.whl name: pydantic-core version: 2.46.4 @@ -30502,13 +30375,6 @@ packages: requires_dist: - typing-extensions>=4.14.1 requires_python: '>=3.9' -- pypi: https://files.pythonhosted.org/packages/fd/35/202235eb5c3c14c212462cd91d61b7386bf8fc44bc7a77f4742d2a69174b/coverage-7.14.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl - name: coverage - version: 7.14.0 - sha256: 9336e23e8bb3a3925398261385e2a1533957d3e760e91070dcb0e98bfa514eed - requires_dist: - - tomli ; python_full_version <= '3.11' and extra == 'toml' - requires_python: '>=3.10' - pypi: https://files.pythonhosted.org/packages/fd/7b/122376b1fd3c62c1ed9dc80c931ace4844b3c55407b6fb2d199377c9736f/pydantic-2.13.4-py3-none-any.whl name: pydantic version: 2.13.4 diff --git a/pixi.toml b/pixi.toml index be9550a0f8..8ca52515fe 100644 --- a/pixi.toml +++ b/pixi.toml @@ -16,8 +16,8 @@ python = "3.13.*" [feature.py314.dependencies] python = "3.14.*" -[feature.sklearn15.dependencies] -scikit-learn = "1.5.*" +[feature.sklearn16.dependencies] +scikit-learn = "1.6.*" [feature.sklearn17.dependencies] scikit-learn = "1.7.*" @@ -25,6 +25,9 @@ scikit-learn = "1.7.*" [feature.sklearn18.dependencies] scikit-learn = "1.8.*" +[feature.sklearn19.dependencies] +scikit-learn = "1.9.*" + [feature.mlflow2.dependencies] mlflow = "2.*" @@ -61,16 +64,16 @@ docs = { cmd = "make html", cwd = "sphinx" } scripts = ["scripts/activate_dot.sh"] [environments] -py311-sklearn15 = ["py311", "sklearn15", "test"] -py311-sklearn15-mlflow2 = ["py311", "sklearn15", "mlflow2", "test"] -py311-sklearn18 = ["py311", "sklearn18", "test"] -py312-sklearn15 = ["py312", "sklearn15", "test"] -py312-sklearn18 = ["py312", "sklearn18", "test"] -py313-sklearn15 = ["py313", "sklearn15", "test"] -py313-sklearn18 = ["py313", "sklearn18", "test"] +py311-sklearn16 = ["py311", "sklearn16", "test"] +py311-sklearn16-mlflow2 = ["py311", "sklearn16", "mlflow2", "test"] +py311-sklearn19 = ["py311", "sklearn19", "test"] +py312-sklearn19 = ["py312", "sklearn19", "test"] +py313-sklearn16 = ["py313", "sklearn16", "test"] +py313-sklearn19 = ["py313", "sklearn19", "test"] py314-sklearn17 = ["py314", "sklearn17", "test"] py314-sklearn18 = ["py314", "sklearn18", "test"] -py314-sklearn18-pandas2 = ["py314", "sklearn18", "pandas2", "test"] -py314-sklearn18-mlflow3 = ["py314", "sklearn18", "mlflow3", "test"] -sphinx = ["py314", "sklearn18", "sphinx"] +py314-sklearn19 = ["py314", "sklearn19", "test"] +py314-sklearn19-pandas2 = ["py314", "sklearn19", "pandas2", "test"] +py314-sklearn19-mlflow3 = ["py314", "sklearn19", "mlflow3", "test"] +sphinx = ["py314", "sklearn19", "sphinx"] lint = ["py312", "lint"] From 7783efcee9a324afdbdbefd939cb279c6957f040 Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Thu, 4 Jun 2026 23:11:06 +0200 Subject: [PATCH 09/12] _ --- .github/workflows/pytest.yml | 22 +++++++++++----------- 1 file changed, 11 insertions(+), 11 deletions(-) diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index 555905391c..959be50717 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -86,23 +86,23 @@ jobs: matrix: os: [ubuntu-latest, windows-latest] environment: - - py311-sklearn15 - - py311-sklearn15-mlflow2 - - py311-sklearn18 - - py312-sklearn15 - - py312-sklearn18 - - py313-sklearn15 - - py313-sklearn18 + - py311-sklearn16 + - py311-sklearn16-mlflow2 + - py311-sklearn19 + - py312-sklearn19 + - py313-sklearn16 + - py313-sklearn19 - py314-sklearn17 - py314-sklearn18 - - py314-sklearn18-pandas2 - - py314-sklearn18-mlflow3 + - py314-sklearn19 + - py314-sklearn19-pandas2 + - py314-sklearn19-mlflow3 exclude: - os: windows-latest - environment: py314-sklearn18-pandas2 + environment: py314-sklearn19-pandas2 include: - os: ubuntu-latest - environment: py314-sklearn18 + environment: py314-sklearn19 coverage: true runs-on: ${{ matrix.os }} permissions: From 1156c27b43725236526f6c9db2e29b6a6b1f08e3 Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Mon, 8 Jun 2026 17:50:51 +0200 Subject: [PATCH 10/12] _ --- .gitignore | 3 + CONTRIBUTING.rst | 120 ++++- .../scikit-learn-1.9/test-requirements.txt | 455 ------------------ docs/how-to/bump-minimal-python-version.md | 30 ++ pixi.lock | 99 ++++ pixi.toml | 13 + skore/supported-versions.json | 32 -- 7 files changed, 258 insertions(+), 494 deletions(-) delete mode 100644 ci/requirements/skore/python-3.13/scikit-learn-1.9/test-requirements.txt create mode 100644 docs/how-to/bump-minimal-python-version.md delete mode 100644 skore/supported-versions.json diff --git a/.gitignore b/.gitignore index f37103fc06..5462f9f352 100644 --- a/.gitignore +++ b/.gitignore @@ -203,6 +203,9 @@ skore/LICENSE # uv uv.lock +# Pip requirements generated on demand via `pixi run -e export export-requirements` +/requirements.txt + # mlflow mlflow.db mlruns diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst index bf8fcb51bb..30869fa832 100644 --- a/CONTRIBUTING.rst +++ b/CONTRIBUTING.rst @@ -85,22 +85,116 @@ You will find below some code you can use in your terminal, using HTTPS connecti # Create a new branch for your issue git checkout -b issue-NAME_OF_ISSUE -We strongly recommend using a virtual environment to isolate your development dependencies. +You can set up your development environment in two ways: -Once your environment is set up, install the development dependencies and setup pre-commit with: +- with `pixi `_, which is the workflow used by our CI and the + recommended way to reproduce it exactly (see `Using pixi`_); +- with a plain virtual environment and ``pip`` (see `Using a virtual environment and pip`_). - .. code-block:: bash +Using pixi +"""""""""" - make install-skore +Our continuous integration relies on `pixi `_ to manage and lock the +development environments. The full matrix of environments (Python and ``scikit-learn`` +versions, documentation, linting, ...) is declared in the ``pixi.toml`` file at the root +of the repository, and locked in ``pixi.lock``. Using pixi is therefore the most reliable +way to reproduce the environment used by the CI. - On `old CPU architecture `_ to get the support of ``polars``: +First, install pixi by following the `official installation instructions +`_. On Linux and macOS, this is usually: - .. code-block:: bash +.. code-block:: bash + + curl -fsSL https://pixi.sh/install.sh | sh + +pixi creates an isolated environment for you (you do not need to create a virtual +environment yourself) and downloads the dependencies on first use. The environments are +named in the ``[environments]`` table of ``pixi.toml``. The most common commands are: + +.. code-block:: bash + + # Run the test suite in a given environment + pixi run -e py311-sklearn19 tests + + # Run the linters (ruff, pre-commit hooks, ...) + pixi run -e lint lint + + # Build the documentation + pixi run -e sphinx docs + +The ``sphinx`` environment also installs ``graphviz`` (which provides the ``dot`` +command used to render some diagrams), so you do not have to install it yourself when +building the documentation with pixi. + +Using a virtual environment and pip +""""""""""""""""""""""""""""""""""" + +If you prefer not to use pixi, you can work in a standard virtual environment. You will +need ``python >=3.11``. + +Create and activate a virtual environment, for instance with the built-in `venv +`_ module: + +.. code-block:: bash + + # Create a virtual environment in the `.venv` directory + python -m venv .venv + + # Activate it (Linux/macOS) + source .venv/bin/activate + + # Activate it (Windows, PowerShell) + .venv\Scripts\Activate.ps1 + +Once your environment is activated, install the development dependencies and setup +pre-commit with: + +.. code-block:: bash + + make install-skore - make install-skore-lts-cpu +On `old CPU architecture `_ to get the support of ``polars``: + +.. code-block:: bash + + make install-skore-lts-cpu Consider re-executing this command each time you rebase your branch with main, as dependencies can change. +To build the documentation in this setup, you also need the ``dot`` command from +`Graphviz `_, which is **not** installed by ``pip``. +Install it with your system package manager, for example: + +.. code-block:: bash + + # Debian/Ubuntu + sudo apt-get install graphviz + + # macOS (Homebrew) + brew install graphviz + +Reproducing the CI environment with pip +"""""""""""""""""""""""""""""""""""""""" + +The dependency versions used by the CI are locked only in pixi's own format +(``pixi.lock``). If you do not use pixi but still want a pinned, cross-package-manager +``requirements.txt`` derived from ``skore/pyproject.toml``, you can generate one on +demand with the dedicated pixi task: + +.. code-block:: bash + + pixi run -e export export-requirements + +This resolves the dependencies (including the ``test`` extra) with `uv +`_ for the Python version pinned by the ``export`` +environment and writes the result to ``requirements.txt`` at the root of the repository. +The generated file is intentionally not committed; you can then install it with any +pip-compatible tool: + +.. code-block:: bash + + pip install -r requirements.txt + Choosing an issue ----------------- @@ -202,6 +296,11 @@ Setup Our documentation uses the `PyData Sphinx Theme `_. +Building the documentation requires the ``dot`` command from `Graphviz +`_. It is bundled with the ``sphinx`` pixi environment; +if you build the docs in a plain virtual environment, make sure Graphviz is installed on +your system (see `Using a virtual environment and pip`_). + To build the docs: .. code-block:: bash @@ -209,6 +308,13 @@ To build the docs: cd sphinx make html +Alternatively, you can build them through pixi from the repository root, which also +provides ``dot``: + +.. code-block:: bash + + pixi run -e sphinx docs + You can access the local build at: .. code-block:: bash diff --git a/ci/requirements/skore/python-3.13/scikit-learn-1.9/test-requirements.txt b/ci/requirements/skore/python-3.13/scikit-learn-1.9/test-requirements.txt deleted file mode 100644 index 28933ca9ed..0000000000 --- a/ci/requirements/skore/python-3.13/scikit-learn-1.9/test-requirements.txt +++ /dev/null @@ -1,455 +0,0 @@ -aiohappyeyeballs==2.6.2 - # via aiohttp -aiohttp==3.14.0 - # via mlflow -aiosignal==1.4.0 - # via aiohttp -alembic==1.18.4 - # via mlflow -annotated-doc==0.0.4 - # via fastapi -annotated-types==0.7.0 - # via pydantic -anyio==4.13.0 - # via - # httpx - # starlette -anywidget==0.11.0 - # via skore (skore/pyproject.toml) -asttokens==3.0.1 - # via stack-data -attrs==26.1.0 - # via aiohttp -blinker==1.9.0 - # via flask -cachetools==7.1.4 - # via - # mlflow-skinny - # mlflow-tracing -certifi==2026.5.20 - # via - # httpcore - # httpx - # requests -cffi==2.0.0 - # via cryptography -cfgv==3.5.0 - # via pre-commit -charset-normalizer==3.4.7 - # via requests -click==8.4.1 - # via - # flask - # mlflow-skinny - # uvicorn -cloudpickle==3.1.2 - # via mlflow-skinny -comm==0.2.3 - # via ipywidgets -contourpy==1.3.3 - # via matplotlib -coverage[toml]==7.14.1 - # via pytest-cov -cryptography==48.0.0 - # via - # google-auth - # mlflow -cycler==0.12.1 - # via matplotlib -databricks-sdk==0.114.0 - # via - # mlflow-skinny - # mlflow-tracing -decorator==5.3.1 - # via ipython -diskcache==5.6.3 - # via skore (skore/pyproject.toml) -distlib==0.4.1 - # via virtualenv -docker==7.1.0 - # via mlflow -execnet==2.1.2 - # via pytest-xdist -executing==2.2.1 - # via stack-data -fastapi==0.136.3 - # via mlflow-skinny -filelock==3.29.1 - # via - # python-discovery - # virtualenv -flask==3.1.3 - # via - # flask-cors - # mlflow -flask-cors==6.0.2 - # via mlflow -fonttools==4.63.0 - # via matplotlib -frozenlist==1.8.0 - # via - # aiohttp - # aiosignal -gitdb==4.0.12 - # via gitpython -gitpython==3.1.50 - # via mlflow-skinny -google-auth==2.53.0 - # via databricks-sdk -graphene==3.4.3 - # via mlflow -graphql-core==3.2.8 - # via - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -greenlet==3.5.1 - # via sqlalchemy -gunicorn==26.0.0 - # via mlflow -h11==0.16.0 - # via - # httpcore - # uvicorn -httpcore==1.0.9 - # via httpx -httpx==0.28.1 - # via - # skore (skore/pyproject.toml) - # respx -huey==3.0.1 - # via mlflow -identify==2.6.19 - # via pre-commit -idna==3.18 - # via - # anyio - # httpx - # requests - # yarl -importlib-metadata==9.0.0 - # via mlflow-skinny -iniconfig==2.3.0 - # via pytest -ipython==9.14.0 - # via - # skore (skore/pyproject.toml) - # ipywidgets -ipython-pygments-lexers==1.1.1 - # via ipython -ipywidgets==8.1.8 - # via - # skore (skore/pyproject.toml) - # anywidget - # rich -itsdangerous==2.2.0 - # via flask -jedi==0.20.0 - # via - # skore (skore/pyproject.toml) - # ipython -jinja2==3.1.6 - # via - # skore (skore/pyproject.toml) - # flask - # skrub -joblib==1.5.3 - # via - # skore (skore/pyproject.toml) - # scikit-learn -jupyterlab-widgets==3.0.16 - # via ipywidgets -kiwisolver==1.5.0 - # via matplotlib -mako==1.3.12 - # via alembic -markdown-it-py==4.2.0 - # via rich -markupsafe==3.0.3 - # via - # flask - # jinja2 - # mako - # werkzeug -matplotlib==3.10.9 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -matplotlib-inline==0.2.2 - # via ipython -mdurl==0.1.2 - # via markdown-it-py -mlflow==3.13.0 - # via skore (skore/pyproject.toml) -mlflow-skinny==3.13.0 - # via mlflow -mlflow-tracing==3.13.0 - # via mlflow -multidict==6.7.1 - # via - # aiohttp - # yarl -narwhals==2.22.0 - # via - # plotly - # scikit-learn -nodeenv==1.10.0 - # via pre-commit -numpy==2.4.6 - # via - # skore (skore/pyproject.toml) - # contourpy - # matplotlib - # mlflow - # numpy-typing-compat - # optype - # pandas - # scikit-learn - # scipy - # seaborn - # skops - # skrub -numpy-typing-compat==20251206.2.4 - # via optype -opentelemetry-api==1.42.1 - # via - # mlflow-skinny - # mlflow-tracing - # opentelemetry-sdk - # opentelemetry-semantic-conventions -opentelemetry-proto==1.42.1 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-sdk==1.42.1 - # via - # mlflow-skinny - # mlflow-tracing -opentelemetry-semantic-conventions==0.63b1 - # via opentelemetry-sdk -optype[numpy]==0.17.1 - # via scipy-stubs -orjson==3.11.9 - # via skore (skore/pyproject.toml) -packaging==26.2 - # via - # gunicorn - # matplotlib - # mlflow-skinny - # mlflow-tracing - # plotly - # pytest - # skops -pandas==2.3.3 - # via - # skore (skore/pyproject.toml) - # mlflow - # seaborn - # skrub -parso==0.8.7 - # via jedi -pexpect==4.9.0 - # via ipython -pillow==12.2.0 - # via matplotlib -platformdirs==4.10.0 - # via - # skore (skore/pyproject.toml) - # python-discovery - # virtualenv -plotly==6.8.0 - # via skore (skore/pyproject.toml) -pluggy==1.6.0 - # via - # pytest - # pytest-cov -polars==1.41.2 - # via skore (skore/pyproject.toml) -polars-runtime-32==1.41.2 - # via polars -pre-commit==4.6.0 - # via skore (skore/pyproject.toml) -prettytable==3.17.0 - # via skops -prompt-toolkit==3.0.52 - # via ipython -propcache==0.5.2 - # via - # aiohttp - # yarl -protobuf==6.33.6 - # via - # databricks-sdk - # mlflow-skinny - # mlflow-tracing - # opentelemetry-proto -psutil==7.2.2 - # via ipython -psygnal==0.15.1 - # via anywidget -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.3 - # via stack-data -pyarrow==24.0.0 - # via - # skore (skore/pyproject.toml) - # mlflow -pyasn1==0.6.3 - # via pyasn1-modules -pyasn1-modules==0.4.2 - # via google-auth -pycparser==3.0 - # via cffi -pydantic==2.13.4 - # via - # skore (skore/pyproject.toml) - # fastapi - # mlflow-skinny - # mlflow-tracing -pydantic-core==2.46.4 - # via pydantic -pydot==4.0.1 - # via skrub -pygments==2.20.0 - # via - # ipython - # ipython-pygments-lexers - # pytest - # rich -pyparsing==3.3.2 - # via - # matplotlib - # pydot -pytest==9.0.3 - # via - # skore (skore/pyproject.toml) - # pytest-cov - # pytest-order - # pytest-randomly - # pytest-xdist -pytest-cov==7.1.0 - # via skore (skore/pyproject.toml) -pytest-order==1.4.0 - # via skore (skore/pyproject.toml) -pytest-randomly==4.1.0 - # via skore (skore/pyproject.toml) -pytest-xdist==3.8.0 - # via skore (skore/pyproject.toml) -python-dateutil==2.9.0.post0 - # via - # graphene - # matplotlib - # pandas -python-discovery==1.4.0 - # via virtualenv -python-dotenv==1.2.2 - # via mlflow-skinny -pytz==2026.2 - # via pandas -pyyaml==6.0.3 - # via - # mlflow-skinny - # pre-commit -requests==2.34.2 - # via - # databricks-sdk - # docker - # mlflow-skinny - # skrub -respx==0.23.1 - # via skore (skore/pyproject.toml) -rich[jupyter]==15.0.0 - # via skore (skore/pyproject.toml) -scikit-learn==1.9.0 - # via - # --override skore/overrides.txt - # skore (skore/pyproject.toml) - # mlflow - # skops - # skrub -scipy==1.17.1 - # via - # skore (skore/pyproject.toml) - # mlflow - # scikit-learn - # skops - # skrub -scipy-stubs==1.17.1.5 - # via skore (skore/pyproject.toml) -seaborn==0.13.2 - # via skore (skore/pyproject.toml) -six==1.17.0 - # via python-dateutil -skops==0.14.0 - # via mlflow -skrub==0.9.0 - # via skore (skore/pyproject.toml) -smmap==5.0.3 - # via gitdb -sqlalchemy==2.0.50 - # via - # alembic - # mlflow -sqlparse==0.5.5 - # via mlflow-skinny -stack-data==0.6.3 - # via ipython -starlette==1.2.1 - # via - # fastapi - # mlflow-skinny -threadpoolctl==3.6.0 - # via scikit-learn -traitlets==5.15.1 - # via - # ipython - # ipywidgets - # matplotlib-inline -typing-extensions==4.15.0 - # via - # alembic - # anywidget - # fastapi - # graphene - # mlflow-skinny - # opentelemetry-api - # opentelemetry-sdk - # opentelemetry-semantic-conventions - # pydantic - # pydantic-core - # sqlalchemy - # typing-inspection -typing-inspection==0.4.2 - # via - # fastapi - # pydantic -tzdata==2026.2 - # via pandas -urllib3==2.7.0 - # via - # docker - # requests -uvicorn==0.49.0 - # via mlflow-skinny -virtualenv==21.4.2 - # via pre-commit -wcwidth==0.7.0 - # via - # prettytable - # prompt-toolkit -werkzeug==3.1.8 - # via - # flask - # flask-cors -widgetsnbextension==4.0.15 - # via ipywidgets -xdoctest==1.3.2 - # via skore (skore/pyproject.toml) -yarl==1.24.2 - # via aiohttp -zipp==4.1.0 - # via importlib-metadata diff --git a/docs/how-to/bump-minimal-python-version.md b/docs/how-to/bump-minimal-python-version.md new file mode 100644 index 0000000000..b8df83d7a5 --- /dev/null +++ b/docs/how-to/bump-minimal-python-version.md @@ -0,0 +1,30 @@ +# How to bump the minimum required version of Python + +Since dependencies and the CI matrix are managed by [pixi](https://pixi.sh) +(`pixi.toml` / `pixi.lock`), bumping the minimum supported Python version touches both +the package metadata and the pixi configuration. + +- Update `skore/pyproject.toml` + - `requires-python` + - the `Programming Language :: Python :: 3.x` classifiers +- Update `pixi.toml` + - remove the `[feature.py3xx]` table for the dropped version + - update the `[environments]` table to drop every environment relying on the removed + `py3xx` feature +- Update `.github/workflows/pytest.yml` + - update the `matrix.environment` list (and any `exclude` / `include` entries) so it + stays in sync with the `[environments]` table of `pixi.toml` +- Refresh the lockfile so it matches the new configuration: + + ```bash + pixi install + # or, to also pick up newer dependency versions: + pixi update + ``` + +- Update `README.md` + - the Python badge + - the "You need `python>=3.x`" mention + - the "Support" section listing the tested Python/scikit-learn versions +- Update `CONTRIBUTING.rst` + - the "You will need `python >=3.x`" mention diff --git a/pixi.lock b/pixi.lock index a5f5c53b60..1ae0f9b032 100644 --- a/pixi.lock +++ b/pixi.lock @@ -8,6 +8,69 @@ environments: channels: - 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conda: https://prefix.dev/conda-forge/noarch/tzdata-2025c-hc9c84f9_1.conda + osx-arm64: + - conda: https://prefix.dev/conda-forge/noarch/ca-certificates-2026.5.20-hbd8a1cb_0.conda + - conda: https://prefix.dev/conda-forge/noarch/tzdata-2025c-hc9c84f9_1.conda + - conda: https://prefix.dev/conda-forge/osx-arm64/bzip2-1.0.8-hd037594_9.conda + - conda: https://prefix.dev/conda-forge/osx-arm64/icu-78.3-hef89b57_0.conda + - conda: https://prefix.dev/conda-forge/osx-arm64/libcxx-22.1.7-h55c6f16_0.conda + - conda: https://prefix.dev/conda-forge/osx-arm64/libexpat-2.8.1-hf6b4638_0.conda + - conda: https://prefix.dev/conda-forge/osx-arm64/libffi-3.5.2-hcf2aa1b_0.conda + - conda: https://prefix.dev/conda-forge/osx-arm64/liblzma-5.8.3-h8088a28_0.conda + - conda: https://prefix.dev/conda-forge/osx-arm64/libsqlite-3.53.2-h1ae2325_0.conda + - conda: https://prefix.dev/conda-forge/osx-arm64/libzlib-1.3.2-h8088a28_2.conda + - conda: https://prefix.dev/conda-forge/osx-arm64/ncurses-6.6-h1d4f5a5_0.conda + - 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vc >=14.3,<15 + - vc14_runtime >=14.44.35208 + - ucrt >=10.0.20348.0 + license: Apache-2.0 OR MIT + run_exports: {} + size: 19723722 + timestamp: 1780539201250 - conda: https://prefix.dev/conda-forge/win-64/vc-14.5-h1b7c187_38.conda sha256: 61b68e5a4fc71a17f8d64b12e013a2f971ad980bd08e9c389d5e68efe1a67de0 md5: 774568633f3b26d7a4a6dd4f9ea6d3e1 diff --git a/pixi.toml b/pixi.toml index 8ca52515fe..c0322b77c3 100644 --- a/pixi.toml +++ b/pixi.toml @@ -51,6 +51,18 @@ pre-commit = "*" [feature.lint.tasks] lint = "pre-commit install && pre-commit run -v --all-files --show-diff-on-failure" +# Generate a pip-only, cross-package-manager `requirements.txt` from +# `skore/pyproject.toml`. The CI lockfiles only exist in pixi "language" +# (`pixi.lock`); this task lets contributors who do not use pixi reproduce a +# comparable environment with any pip-compatible tool (pip, uv, etc.). +# The Python version used for the resolution is the one pinned by the +# environment (see `export` in `[environments]`). +[feature.export.dependencies] +uv = "*" + +[feature.export.tasks] +export-requirements = "uv pip compile skore/pyproject.toml --extra test --no-header --output-file requirements.txt" + [feature.sphinx.dependencies] graphviz = "*" @@ -77,3 +89,4 @@ py314-sklearn19-pandas2 = ["py314", "sklearn19", "pandas2", "test"] py314-sklearn19-mlflow3 = ["py314", "sklearn19", "mlflow3", "test"] sphinx = ["py314", "sklearn19", "sphinx"] lint = ["py312", "lint"] +export = ["py311", "export"] diff --git a/skore/supported-versions.json b/skore/supported-versions.json deleted file mode 100644 index 6891617e81..0000000000 --- a/skore/supported-versions.json +++ /dev/null @@ -1,32 +0,0 @@ -[ - {"os": "ubuntu-latest", "python": "3.11", "dependencies": ["scikit-learn==1.6.*"], "coverage": false}, - {"os": "ubuntu-latest", "python": "3.11", "dependencies": ["scikit-learn==1.6.*", "mlflow==2.*"], "coverage": false}, - {"os": "ubuntu-latest", "python": "3.11", "dependencies": ["scikit-learn==1.9.*"], "coverage": false}, - - {"os": "ubuntu-latest", "python": "3.12", "dependencies": ["scikit-learn==1.6.*"], "coverage": false}, - {"os": "ubuntu-latest", "python": "3.12", "dependencies": ["scikit-learn==1.9.*"], "coverage": false}, - - {"os": "ubuntu-latest", "python": "3.13", "dependencies": ["scikit-learn==1.6.*"], "coverage": false}, - {"os": "ubuntu-latest", "python": "3.13", "dependencies": ["scikit-learn==1.9.*"], "coverage": false}, - - {"os": "ubuntu-latest", "python": "3.14", "dependencies": ["scikit-learn==1.7.*"], "coverage": false}, - {"os": "ubuntu-latest", "python": "3.14", "dependencies": ["scikit-learn==1.8.*"], "coverage": false}, - {"os": "ubuntu-latest", "python": "3.14", "dependencies": ["scikit-learn==1.9.*", "pandas==2.*"], "coverage": false}, - {"os": "ubuntu-latest", "python": "3.14", "dependencies": ["scikit-learn==1.9.*", "mlflow==3.*"], "coverage": false}, - {"os": "ubuntu-latest", "python": "3.14", "dependencies": ["scikit-learn==1.9.*"], "coverage": true}, - - {"os": "windows-latest", "python": "3.11", "dependencies": ["scikit-learn==1.6.*", "mlflow==2.*"], "coverage": false}, - {"os": "windows-latest", "python": "3.11", "dependencies": ["scikit-learn==1.6.*"], "coverage": false}, - {"os": "windows-latest", "python": "3.11", "dependencies": ["scikit-learn==1.9.*"], "coverage": false}, - - {"os": "windows-latest", "python": "3.12", "dependencies": ["scikit-learn==1.6.*"], "coverage": false}, - {"os": "windows-latest", "python": "3.12", "dependencies": ["scikit-learn==1.9.*"], "coverage": false}, - - {"os": "windows-latest", "python": "3.13", "dependencies": ["scikit-learn==1.6.*"], "coverage": false}, - {"os": "windows-latest", "python": "3.13", "dependencies": ["scikit-learn==1.9.*"], "coverage": false}, - - {"os": "windows-latest", "python": "3.14", "dependencies": ["scikit-learn==1.7.*"], "coverage": false}, - {"os": "windows-latest", "python": "3.14", "dependencies": ["scikit-learn==1.8.*"], "coverage": false}, - {"os": "windows-latest", "python": "3.14", "dependencies": ["scikit-learn==1.9.*"], "coverage": false}, - {"os": "windows-latest", "python": "3.14", "dependencies": ["scikit-learn==1.9.*", "mlflow==3.*"], "coverage": false} -] From bb1765aba0c6d136efa781cc96e6ac9f67e196c8 Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Sat, 20 Jun 2026 11:34:14 +0200 Subject: [PATCH 11/12] address reviews --- .github/dependabot.yml | 5 +- .github/workflows/sphinx.yml | 4 +- .github/workflows/update-pixi-lock.yml | 59 + CONTRIBUTING.rst | 29 +- Makefile | 15 - pixi.lock | 2454 +++++++++++++++++++++--- pixi.toml | 39 +- skore/pyproject.toml | 10 + 8 files changed, 2352 insertions(+), 263 deletions(-) create mode 100644 .github/workflows/update-pixi-lock.yml delete mode 100644 Makefile diff --git a/.github/dependabot.yml b/.github/dependabot.yml index d96a88cf2d..3ebb62fed6 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -10,5 +10,6 @@ updates: prefix: "chore(dependencies): GITHUB-ACTIONS" # Python deps are now resolved by pixi (see `pixi.toml` / `pixi.lock`). -# Dependabot has no native pixi ecosystem; refresh the lockfile with `pixi update` -# (manually or via a scheduled workflow). +# Dependabot has no native pixi ecosystem; the lockfile is refreshed by the +# `.github/workflows/update-pixi-lock.yml` scheduled workflow (or manually with +# `pixi lock`). diff --git a/.github/workflows/sphinx.yml b/.github/workflows/sphinx.yml index 2641834dcc..54c7d900f0 100644 --- a/.github/workflows/sphinx.yml +++ b/.github/workflows/sphinx.yml @@ -178,7 +178,7 @@ jobs: SPHINX_EXAMPLE_BASE_URL: ${{ vars.DOCUMENTATION_EXAMPLE_BASE_URL }} - name: Upload documentation - uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7.0.0 + uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1 with: name: sphinx-html-artifact path: sphinx/build/html/ @@ -343,7 +343,7 @@ jobs: needs: [sphinx-deploy-html, sphinx-deploy-root-files, sphinx-deploy-stable] steps: - name: Configure AWS Credentials - uses: aws-actions/configure-aws-credentials@ec61189d14ec14c8efccab744f656cffd0e33f37 # v6.1.0 + uses: aws-actions/configure-aws-credentials@d979d5b3a71173a29b74b5b88418bfda9437d885 # v6.1.1 with: role-to-assume: ${{ vars.AWS_ROLE }} aws-region: ${{ vars.AWS_REGION }} diff --git a/.github/workflows/update-pixi-lock.yml b/.github/workflows/update-pixi-lock.yml new file mode 100644 index 0000000000..e893473f13 --- /dev/null +++ b/.github/workflows/update-pixi-lock.yml @@ -0,0 +1,59 @@ +name: update-pixi-lock + +# Dependabot has no native pixi ecosystem, so it cannot keep `pixi.lock` fresh (see +# `.github/dependabot.yml`). This workflow regenerates the lockfile on a weekly schedule +# (or on demand) and opens a pull request with the result. + +on: + workflow_dispatch: + schedule: + # Every Monday at 05:00 UTC + - cron: '0 5 * * 1' + +permissions: + contents: read + +defaults: + run: + shell: bash + +env: + PIXI_VERSION: v0.69.0 + +jobs: + update-pixi-lock: + if: ${{ github.repository == 'probabl-ai/skore' }} + runs-on: ubuntu-latest + permissions: + contents: write + pull-requests: write + steps: + - name: Checkout code + uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 + + - name: Setup pixi + uses: prefix-dev/setup-pixi@5185adfbffb4bd703da3010310260805d89ebb11 # v0.9.6 + with: + pixi-version: ${{ env.PIXI_VERSION }} + run-install: false + + - name: Update the pixi lock file + run: | + set -eu + rm -f pixi.lock + pixi lock + + - name: Create pull request + uses: peter-evans/create-pull-request@5f6978faf089d4d20b00c7766989d076bb2fc7f1 # v8.1.1 + with: + token: ${{ secrets.GITHUB_TOKEN }} + branch: chore/update-pixi-lock + delete-branch: true + commit-message: "chore(dependencies): Update pixi lock file" + title: "chore(dependencies): Update pixi lock file" + body: | + Automated weekly refresh of `pixi.lock` (`pixi lock` after removing the + existing lock file). + + Dependabot cannot manage the pixi ecosystem, so this replaces it for the + locked Python dependencies. diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst index 30869fa832..c708a9e643 100644 --- a/CONTRIBUTING.rst +++ b/CONTRIBUTING.rst @@ -109,12 +109,17 @@ First, install pixi by following the `official installation instructions pixi creates an isolated environment for you (you do not need to create a virtual environment yourself) and downloads the dependencies on first use. The environments are -named in the ``[environments]`` table of ``pixi.toml``. The most common commands are: +named in the ``[environments]`` table of ``pixi.toml``. The ``default`` environment +targets the latest supported Python/scikit-learn stack and is used when no environment is +given. The most common commands are: .. code-block:: bash - # Run the test suite in a given environment - pixi run -e py311-sklearn19 tests + # Run the test suite in the default environment + pixi run tests + + # Run the test suite in a specific environment from the matrix + pixi run -e py311-sklearn16 tests # Run the linters (ruff, pre-commit hooks, ...) pixi run -e lint lint @@ -151,13 +156,15 @@ pre-commit with: .. code-block:: bash - make install-skore + python -m pip install --upgrade --editable './skore[test,sphinx,dev]' + pre-commit install On `old CPU architecture `_ to get the support of ``polars``: .. code-block:: bash - make install-skore-lts-cpu + python -m pip install --upgrade --editable './skore[test-lts-cpu,sphinx-lts-cpu,dev]' + pre-commit install Consider re-executing this command each time you rebase your branch with main, as dependencies can change. @@ -267,7 +274,11 @@ To run the tests locally, you may run: .. code-block:: bash - make test + # With pixi (uses the default environment) + pixi run tests + + # Or, in a plain virtual environment, from the `skore` directory + cd skore && pytest Linting ------- @@ -276,7 +287,11 @@ We use the linter ruff to make sure that the code is formatted correctly: .. code-block:: bash - make lint + # With pixi + pixi run -e lint lint + + # Or, in a plain virtual environment + pre-commit run --all-files Pre-commit Hooks ^^^^^^^^^^^^^^^^ diff --git a/Makefile b/Makefile deleted file mode 100644 index 760f874cab..0000000000 --- a/Makefile +++ /dev/null @@ -1,15 +0,0 @@ -install-skore: - python -m pip install --upgrade --editable './skore[test,sphinx,dev]' - pre-commit install - -install-skore-lts-cpu: - python -m pip install --upgrade --editable './skore[test-lts-cpu,sphinx-lts-cpu,dev]' - pre-commit install - -lint: - pre-commit run --all-files - -test-backend: - cd skore && pytest - -test: lint test-backend diff --git a/pixi.lock b/pixi.lock index 1ae0f9b032..2dca281bc3 100644 --- a/pixi.lock +++ b/pixi.lock @@ -7,7 +7,561 @@ environments: default: channels: - url: https://prefix.dev/conda-forge/ - packages: {} + indexes: + - https://pypi.org/simple + packages: + linux-64: + - conda: https://prefix.dev/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda + - conda: https://prefix.dev/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda + - 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platformdirs ; extra == 'local' - mlflow>=2.20.4 ; extra == 'mlflow' @@ -30609,12 +32617,12 @@ packages: - sphinx<8.2.0 ; extra == 'sphinx-lts-cpu' - xgboost-cpu ; sys_platform != 'darwin' and extra == 'sphinx-lts-cpu' - xgboost ; sys_platform == 'darwin' and extra == 'sphinx-lts-cpu' - - anywidget ; extra == 'test' + - build ; extra == 'test' - httpx ; extra == 'test' - ipython ; extra == 'test' - - ipywidgets ; extra == 'test' - jedi ; extra == 'test' - mlflow>=2.20.4 ; extra == 'test' + - mypy ; extra == 'test' - orjson ; extra == 'test' - polars ; extra == 'test' - pre-commit ; extra == 'test' @@ -30630,12 +32638,12 @@ packages: - scipy ; extra == 'test' - scipy-stubs ; extra == 'test' - xdoctest ; extra == 'test' - - anywidget ; extra == 'test-base' + - build ; extra == 'test-base' - httpx ; extra == 'test-base' - ipython ; extra == 'test-base' - - ipywidgets ; extra == 'test-base' - jedi ; extra == 'test-base' - mlflow>=2.20.4 ; extra == 'test-base' + - mypy ; extra == 'test-base' - orjson ; extra == 'test-base' - pre-commit ; extra == 'test-base' - pydantic ; extra == 'test-base' @@ -30649,12 +32657,12 @@ packages: - scipy ; extra == 'test-base' - scipy-stubs ; extra == 'test-base' - xdoctest ; extra == 'test-base' - - anywidget ; extra == 'test-lts-cpu' + - build ; extra == 'test-lts-cpu' - httpx ; extra == 'test-lts-cpu' - ipython ; extra == 'test-lts-cpu' - - ipywidgets ; extra == 'test-lts-cpu' - jedi ; extra == 'test-lts-cpu' - mlflow>=2.20.4 ; extra == 'test-lts-cpu' + - mypy ; extra == 'test-lts-cpu' - orjson ; extra == 'test-lts-cpu' - polars-lts-cpu ; extra == 'test-lts-cpu' - pre-commit ; extra == 'test-lts-cpu' diff --git a/pixi.toml b/pixi.toml index c0322b77c3..b1b59b1a7d 100644 --- a/pixi.toml +++ b/pixi.toml @@ -37,14 +37,22 @@ mlflow = "3.*" [feature.pandas2.dependencies] pandas = "2.*" -[feature.test.pypi-dependencies] -skore = { path = "skore", editable = true, extras = ["test"] } - [feature.test.tasks] tests = { cmd = "pytest src/ tests/ --no-cov", cwd = "skore" } tests-coverage = { cmd = "pytest src/ tests/ --showlocals --durations=20 --junitxml=coverage/pytest.xml -o junit_family=legacy --cov-config=pyproject.toml --cov=skore --cov-report=", cwd = "skore" } coverage-combine = { cmd = "(coverage combine --append || true) && coverage xml -o coverage/coverage.xml", cwd = "skore" } +# `skore` is installed in two flavours depending on the environment: +# - `editable`: an editable install for local development, so source changes are +# picked up without rebuilding (used by the `default` environment). +# - `wheel`: a regular (built) install, so the CI matrix tests the package exactly +# as a user would consume it instead of testing `src/` directly. +[feature.editable.pypi-dependencies] +skore = { path = "skore", editable = true, extras = ["test"] } + +[feature.wheel.pypi-dependencies] +skore = { path = "skore", extras = ["test"] } + [feature.lint.dependencies] pre-commit = "*" @@ -76,17 +84,20 @@ docs = { cmd = "make html", cwd = "sphinx" } scripts = ["scripts/activate_dot.sh"] [environments] -py311-sklearn16 = ["py311", "sklearn16", "test"] -py311-sklearn16-mlflow2 = ["py311", "sklearn16", "mlflow2", "test"] -py311-sklearn19 = ["py311", "sklearn19", "test"] -py312-sklearn19 = ["py312", "sklearn19", "test"] -py313-sklearn16 = ["py313", "sklearn16", "test"] -py313-sklearn19 = ["py313", "sklearn19", "test"] -py314-sklearn17 = ["py314", "sklearn17", "test"] -py314-sklearn18 = ["py314", "sklearn18", "test"] -py314-sklearn19 = ["py314", "sklearn19", "test"] -py314-sklearn19-pandas2 = ["py314", "sklearn19", "pandas2", "test"] -py314-sklearn19-mlflow3 = ["py314", "sklearn19", "mlflow3", "test"] +# Default environment for local development: latest supported stack with an +# editable install, so `pixi run tests` reflects local source changes. +default = ["py314", "sklearn19", "test", "editable"] +py311-sklearn16 = ["py311", "sklearn16", "test", "wheel"] +py311-sklearn16-mlflow2 = ["py311", "sklearn16", "mlflow2", "test", "wheel"] +py311-sklearn19 = ["py311", "sklearn19", "test", "wheel"] +py312-sklearn19 = ["py312", "sklearn19", "test", "wheel"] +py313-sklearn16 = ["py313", "sklearn16", "test", "wheel"] +py313-sklearn19 = ["py313", "sklearn19", "test", "wheel"] +py314-sklearn17 = ["py314", "sklearn17", "test", "wheel"] +py314-sklearn18 = ["py314", "sklearn18", "test", "wheel"] +py314-sklearn19 = ["py314", "sklearn19", "test", "wheel"] +py314-sklearn19-pandas2 = ["py314", "sklearn19", "pandas2", "test", "wheel"] +py314-sklearn19-mlflow3 = ["py314", "sklearn19", "mlflow3", "test", "wheel"] sphinx = ["py314", "sklearn19", "sphinx"] lint = ["py312", "lint"] export = ["py311", "export"] diff --git a/skore/pyproject.toml b/skore/pyproject.toml index e4aeb8156b..ab353d5ee9 100644 --- a/skore/pyproject.toml +++ b/skore/pyproject.toml @@ -147,6 +147,16 @@ source = ["skore"] concurrency = ["thread", "multiprocessing"] parallel = true +# The CI matrix installs `skore` as a built wheel (see `pixi.toml`), so coverage is +# collected against `site-packages`. Map those paths back to the repository sources +# so the combined report (and Codecov) reference `src/skore` instead. +[tool.coverage.paths] +skore = [ + "src/skore", + "*/site-packages/skore", + "*\\site-packages\\skore", +] + [tool.coverage.report] omit = ["*/_externals/*"] show_missing = true From 0c7f3037a21c76716d4292b8f6a0f8f355ea4d9b Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Sat, 20 Jun 2026 11:41:18 +0200 Subject: [PATCH 12/12] fix lint env --- pixi.lock | 787 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ pixi.toml | 2 +- 2 files changed, 788 insertions(+), 1 deletion(-) diff --git a/pixi.lock b/pixi.lock index 2dca281bc3..8bad95c207 100644 --- a/pixi.lock +++ b/pixi.lock @@ -628,29 +628,40 @@ environments: lint: channels: - url: https://prefix.dev/conda-forge/ + indexes: + - https://pypi.org/simple packages: linux-64: - conda: https://prefix.dev/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda - conda: https://prefix.dev/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda - 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