eks/pyproject.toml at main · paninski-lab/eks · GitHub

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[build-system]
requires = ["poetry-core>=2.0.0"]
build-backend = "poetry.core.masonry.api"

[project]
name = "ensemble-kalman-smoother"
version = "4.6.0"
description = "Ensembling and kalman smoothing for pose estimation"
license = "MIT"
readme = "README.md"
requires-python = ">=3.10"
authors = [
    { name = "Cole Hurwitz"},
    { name = "Keemin Lee"},
    { name = "Matt Whiteway" },
]
maintainers = [
    { name = "Matt Whiteway"},
]
keywords = ["machine learning", "state space models", "pose estimation"]
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
    "Topic :: Scientific/Engineering :: Image Processing",
    "Topic :: Scientific/Engineering :: Visualization",
]

dependencies = [
    "aniposelib",
    # Transient dep of dynamax, pinned to prevent starlette upgrade which breaks LPA.
    # https://github.com/paninski-lab/eks/issues/70#issuecomment-4217129266
    "python-fasthtml (<=0.12.50)",
    "dynamax (<=1.0.1)",
    # Dynamax needs jax pinned: https://github.com/paninski-lab/eks/issues/70
    "jax (<=0.4.36)",
    "jaxlib",
    "matplotlib",
    "numpy (>=2.0.0)",
    "opencv-python-headless",
    "optax",
    "pandas",
    "scikit-learn",
    "scipy (>=1.2.0)",
    "sleap_io",
    "toml",
    "tqdm",
    "typeguard",
    "typing",
]

[project.scripts]
eks = "eks.cli.main:main"

[project.urls]
repository = "https://github.com/paninski-lab/eks"
documentation = "https://github.com/paninski-lab/eks"

[tool.poetry]
packages = [
    {include = "eks"}
]

# project.dependencies are used for metadata when building the project, tool.poetry.dependencies is only used to enrich
# project.dependencies for locking
[tool.poetry.dependencies]
python = ">=3.10,<3.13"

[project.optional-dependencies]
dev = [
    "autopep8",
    "flake8",
    "ipython",  # dumb dependency issue in fastprogress, installing here so CI doesn't fail
    "isort",
    "pytest",
]

[tool.flake8]
max-line-length = 99
ignore = ["F821", "W503"]
extend-ignore = ["E203"]
exclude = [
    ".git",
    "__pycache__",
    "__init__.py",
    "build",
    "dist",
    "docs/",
]

[tool.isort]
line_length = 99
profile = "black"
src_paths = ["eks", "tests"]

[tool.pytest.ini_options]
testpaths = "tests"
generate_report_on_test = "True"