From 1f25f384eb8d7a487e70b660254e84910755a9f1 Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Sat, 25 Jul 2026 22:31:26 +0200 Subject: [PATCH] deps: wfmash-rs 34339a7 and sweepga a5c3c14 wfmash no longer uses std::filesystem, so the conda osx-64 build no longer needs a macOS 10.15 deployment target. --- Cargo.lock | 4 ++-- Cargo.toml | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 852eedd2..c138209a 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -3101,7 +3101,7 @@ dependencies = [ [[package]] name = "sweepga" version = "0.1.1" -source = "git+https://github.com/pangenome/sweepga?rev=fb2d9aae9cc83e1e198bb7b64cbbdfa7b7c33683#fb2d9aae9cc83e1e198bb7b64cbbdfa7b7c33683" +source = "git+https://github.com/pangenome/sweepga?rev=a5c3c14d47c35b81081c2ab90b18bdad255bd9e2#a5c3c14d47c35b81081c2ab90b18bdad255bd9e2" dependencies = [ "anyhow", "byteorder", @@ -3594,7 +3594,7 @@ dependencies = [ [[package]] name = "wfmash-rs" version = "0.1.0" -source = "git+https://github.com/pangenome/wfmash-rs?rev=91d24d26be32fbac351fcc66a259461333693e09#91d24d26be32fbac351fcc66a259461333693e09" +source = "git+https://github.com/pangenome/wfmash-rs?rev=34339a7f5ead1c5f20ce5226bd5cc9c284d68a30#34339a7f5ead1c5f20ce5226bd5cc9c284d68a30" dependencies = [ "anyhow", "num_cpus", diff --git a/Cargo.toml b/Cargo.toml index 0d66840e..3f907c1b 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -70,7 +70,7 @@ gzp = "1.0.1" # 04f9edb = ddd31d3 (pansn-sparsification) + wfmash-rs 3cc6677 (vendored wfmash v0.14.1). # PanSN haplotype grouping + wfmash-per-hap-pair joblist live upstream; # this impg tree just calls them. Handles 1 _or many_ input FASTAs. -sweepga = { git = "https://github.com/pangenome/sweepga", rev = "fb2d9aae9cc83e1e198bb7b64cbbdfa7b7c33683", default-features = false } +sweepga = { git = "https://github.com/pangenome/sweepga", rev = "a5c3c14d47c35b81081c2ab90b18bdad255bd9e2", default-features = false } seqwish = { git = "https://github.com/pangenome/seqwish", branch = "rust-3" } allwave = { git = "https://github.com/pangenome/allwave", rev = "87fbbb64a388d078e7f6f224e9eb6d5cbfc168f4", default-features = false } @@ -86,7 +86,7 @@ cc = "1" # own build-dependencies, so declare these here even though the code is unused. # Without them build.rs can run first and copy nothing. Revisions must match the # ones sweepga pins, otherwise cargo builds each crate twice. -wfmash-rs = { git = "https://github.com/pangenome/wfmash-rs", rev = "91d24d26be32fbac351fcc66a259461333693e09" } +wfmash-rs = { git = "https://github.com/pangenome/wfmash-rs", rev = "34339a7f5ead1c5f20ce5226bd5cc9c284d68a30" } fastga-rs = { git = "https://github.com/pangenome/fastga-rs", rev = "5216a157f761545c9c3160ea1501ef1beab9c663" } [dev-dependencies]