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    17 repositories

    • alabtools

      Public
      New Version tools for lab utilities
      Python
      •
      GNU General Public License v3.0
      •3•1•0•0•Updated Feb 4, 2026Feb 4, 2026

    • IGM-Plus

      Public
      New version of IGM - integrative Genome Modeling
      volumetric-datasingle-cell-imagingsingle-cell-omics
      volumetric-datasingle-cell-imagingsingle-cell-omicschromatin-tracing
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jan 16, 2026Jan 16, 2026

    • lammpgen

      Public
      Modified version of LAMMPS MD to support integrated genome modeling
      C++
      •
      GNU General Public License v2.0
      •2k•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • MaxComp

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Aug 3, 2025Aug 3, 2025

    • Conformation_Analysis

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 3, 2025Aug 3, 2025

    • genome3danalysis

      Public
      Package for analyzing 3D genome features.
      Python
      •1•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • igm

      Public
      Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures
      Python
      •
      GNU General Public License v3.0
      •5•12•4•0•Updated Jun 15, 2023Jun 15, 2023

    • IGM_2.0

      Public
      IGM with new assignment step for HiC, requires linear scaling only
      Python
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Apr 6, 2023Apr 6, 2023

    • Lorenzo_trial

      Public
      trying to figure out if I can push/pull
      1•0•0•0•Updated Mar 22, 2023Mar 22, 2023

    • cryoET_ScoringFunctions

      Public
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Mar 21, 2021Mar 21, 2021

    • igm-dev

      Public
      Dev repo for IGM platform
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 6, 2019Aug 6, 2019

    • MarcodomainModelPNAS

      Public
      Shell
      •0•0•0•0•Updated Jul 29, 2019Jul 29, 2019

    • igm-model-report

      Public
      Population model basic QC pipeline
      Python
      •0•0•0•0•Updated Mar 11, 2019Mar 11, 2019

    • pgs

      Public
      Population of Genome Structures modeling tools package
      Python
      •5•6•2•0•Updated Apr 9, 2018Apr 9, 2018

    • lammps_hic

      Public
      Python
      •0•0•0•0•Updated Feb 2, 2018Feb 2, 2018

    • tomominer

      Public
      Tomominer package for electron tomogram analysis
      Python
      •
      GNU General Public License v3.0
      •0•5•0•0•Updated Jun 23, 2017Jun 23, 2017

    • 3DGenome_FruitFly

      Public
      The 3D genome organization of Drosophila melanogaster through data integration
      Python
      •1•0•0•0•Updated Jun 2, 2017Jun 2, 2017
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