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    21 repositories

    • slidingRefractory

      Public
      Code to perform a new test of whether neurons have contaminated refractory periods, with a sliding window
      Python
      •
      GNU General Public License v3.0
      •2•3•2•1•Updated Apr 2, 2026Apr 2, 2026

    • npOptoAnalysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 17, 2026Feb 17, 2026

    • SteinmetzLab.github.io

      Public
      Lab website with jekyll theme from https://janczizikow.github.io/sleek/
      HTML
      •
      MIT License
      •634•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • allenCCF

      Public
      Tools to work with Allen Inst CCF data in matlab
      MATLAB
      •80•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • NeuropixelsStorageBox

      Public
      design files and parts list for a cleaning and storage box
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • Kilosort_ultra

      Public
      kilosort 2.5 but customized for ultra-dense probes
      MATLAB
      •
      GNU General Public License v2.0
      •1•2•0•0•Updated Jan 3, 2025Jan 3, 2025

    • npultra-website

      Public
      HTML
      •0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

    • steinmetzlab-style

      Public
      Style guidelines for Steinmetz lab papers
      Python
      •
      MIT License
      •2•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • Rigbox

      Public
      A MATLAB toolbox for running neurophysiological experiments and managing data
      HTML
      •
      Other
      •20•1•0•0•Updated May 28, 2024May 28, 2024

    • qualityMetrics

      Public
      Code to compute single unit quality metrics on neuropixels data
      MATLAB
      •0•4•1•0•Updated Oct 26, 2023Oct 26, 2023

    • noiseCutoff

      Public
      Code to perform a new test of whether neurons have missing spikes (below spike detection threshold) without a Gaussian assumption
      Python
      •0•0•0•0•Updated Sep 28, 2023Sep 28, 2023

    • ottenheimer-et-al-2022

      Public
      Code and pointers to data associated with Ottenheimer, Hjort, Bowen, et al. 2022
      MATLAB
      •
      Other
      •1•0•0•0•Updated Mar 10, 2023Mar 10, 2023

    • Display

      Public
      Unity tools to display stimuli on a 3-ipad screen
      0•0•0•0•Updated Jan 7, 2022Jan 7, 2022

    • ibllib

      Public
      IBL core shared libraries
      Python
      •
      MIT License
      •38•0•0•0•Updated Jan 6, 2022Jan 6, 2022

    • Kilosort

      Public
      Fast spike sorting with drift correction for up to a thousand channels
      MATLAB
      •
      GNU General Public License v2.0
      •286•0•0•0•Updated Sep 22, 2021Sep 22, 2021

    • useful_vs_bias

      Public
      MATLAB
      •0•0•0•0•Updated Jun 3, 2021Jun 3, 2021

    • DataJointPipeline

      Public
      DataJoint pipeline for IBL project
      Jupyter Notebook
      •32•0•0•0•Updated Jun 3, 2021Jun 3, 2021

    • epileptiformGUI

      Public
      MATLAB
      •0•0•0•0•Updated Dec 9, 2020Dec 9, 2020

    • dataToNWB

      Public
      Code for converting data into NWB format
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•4•2•0•Updated Dec 6, 2019Dec 6, 2019

    • alyx

      Public
      Database for experimental neuroscience laboratories
      CSS
      •12•0•0•0•Updated Feb 28, 2019Feb 28, 2019

    • mmmGUI

      Public
      "mouse movie manager" and GUI
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Nov 29, 2018Nov 29, 2018
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