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@SEFSC Southeast Fisheries Science Center

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    27 repositories

    • PEM-ACRF-SEFIS-VideoPreProcessing

      Public
      Python utility for clipping and stitching GoPro video from SEFIS video surveys
      Python
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • SFD-AllocationForecasting

      Public
      An R function to automate stock assessment forecasting in SS under group allocation restraints
      R
      •
      Other
      •2•7•1•0•Updated Apr 16, 2026Apr 16, 2026

    • SEFSC-documentation-jekyll-skeleton

      Public template
      A GitHub Pages documentation template for SEFSC based on the ioos-documentation-jekyll-skeleton repo
      CSS
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • SEFSC-dolphin-analyses

      Public
      various analyses to support the dolphinfish MSE
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Apr 2, 2026Apr 2, 2026

    • SEFSC-ODM-Management-History

      Public
      A method for generating an analysis-ready version of the Management History Dataset
      R
      •
      Other
      •3•5•3•0•Updated Mar 6, 2026Mar 6, 2026

    • SFD-CFB-Caribbean-Strategic-Planning

      Public
      This repo contains all reports, results, and documentation from the Caribbean Strategic Planning project.
      Other
      •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • BAM_MSE

      Public
      Repo to host BAM MSE code development
      C++
      •
      Other
      •1•2•0•0•Updated Feb 3, 2026Feb 3, 2026

    • FATES-BLH-ScaleAgeing

      Public
      Development of a machine learning model for menhaden aging. Originally forked from FATES-BLH-OtolithAgeing and modified to only contain scale ageing.
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Dec 4, 2025Dec 4, 2025

    • SEFSC-Resources

      Public
      Resources for New SEFSC GitHub Users
      Other
      •1•7•1•0•Updated Sep 18, 2025Sep 18, 2025

    • FATES-BLH-OtolithAgeing

      Public
      Development of a machine learning models for fish aging
      Jupyter Notebook
      •
      Other
      •1•1•1•0•Updated Sep 17, 2025Sep 17, 2025

    • SEFSC-PAM-Lab-Manual

      Public
      Lab manual for SEFSC Passive Acoustics Ecology Program
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • SEFSC-documentation-quarto-skeleton

      Public template
      A GitHub Pages documentation template for SEFSC based on the NMFS Open Science NOAA-quarto-simple-python repo
      Dockerfile
      •
      Other
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • documentation-theme-quarto

      Public
      A NOAA Fisheries-branded theme for documentation and help pages created using Quarto.
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • FATES-ATI-FrameXtraction

      Public
      Simple tool for extracting frames from stereo videos and saving as images
      Jupyter Notebook
      •0•0•1•0•Updated Apr 15, 2025Apr 15, 2025

    • FATES-ATI-DomainAdaptationLabelShift

      Public
      0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • FATES-ATI-EnhancedYOLOv8

      Public
      Python
      •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • CEFI-GoMCLIM-DataSynth

      Public
      Data and code used for the US Gulf of Mexico Wide Ecosystem Model (GWEM) developed in Ecopath with Ecosim and Ecospace
      ecosystemresearchmodeling
      ecosystemresearchmodelingfisheriesfoodwebs
      HTML
      •
      Other
      •3•6•1•0•Updated Feb 10, 2025Feb 10, 2025

    • Red_Tide_Methods

      Public
      A repository to track simulation analyses investigating alternative methods for incorporating and modeling red tide effects on fishery populations within the st…
      Other
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • Red_tide_benchmarks

      Public
      Simulation code for testing the impact of red tide mortality on stock assessment benchmark calculations
      R
      •
      Other
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • VesselStrikeRiskModel

      Public
      Vessel strike risk model for large whales
      R
      •
      Apache License 2.0
      •1•3•0•0•Updated Oct 7, 2024Oct 7, 2024

    • documentation-theme-jekyll

      Public
      A Jekyll-based theme designed for documentation and help systems. Forked from NOAA IOOS (https://github.com/ioos/documentation-theme-jekyll), which itself was …
      CSS
      •1.2k•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • FATES-ATI-ChuteFishFullPipeline

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • SEAMAPD21

      Public
      SEAMAPD21 was created to enable fishery scientists and researchers to process raw image-based data at high volumes at a much quicker rate than current manual me…
      Shell
      •
      Other
      •3•5•2•1•Updated Mar 6, 2024Mar 6, 2024

    • SEFSC-Caribbean-Strategic-Plan

      Public
      Sharing resources associated with the SEFSC Caribbean Strategic Planning Project
      JavaScript
      •
      Other
      •0•1•0•0•Updated Mar 5, 2024Mar 5, 2024

    • .github

      Public
      0•0•0•0•Updated Sep 1, 2023Sep 1, 2023

    • QuartoReport_SE

      Public
      Demo report
      TeX
      •16•1•0•0•Updated Aug 12, 2022Aug 12, 2022

    • SEFSC-Template

      Public template
      This is the default SEFSC template for new repositories
      Other
      •3•2•1•0•Updated Jul 6, 2022Jul 6, 2022
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