Skip to content

Further improve set of validation datasets for end-to-end testing #1

@boydgreenfield

Description

@boydgreenfield

First:

  • Twist + Illumina
  • ARTIC v1 + Illumina
  • RNA-seq (Illumina)
  • ARTIC v2 + Illumina
  • ARTIC v3 + Illumina
  • High human known negatives (to test polyA tail mapping and related issues)

Later:

  • ARTIC + ONT
  • dRNA-seq (ONT)

We need truth data for all of these so we can do some golden output testing, i.e., hand inspected variants that we truly believe. This may or may not be doable for some of the RNA-seq data.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions