mlvamaps/setup.py at main · microbemarsh/mlvamaps · GitHub

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from pathlib import Path

from setuptools import find_packages, setup


ROOT = Path(__file__).parent


def _version() -> str:
    namespace = {}
    exec((ROOT / "mlvamaps" / "_version.py").read_text(encoding="utf-8"), namespace)
    return namespace["__version__"]


setup(
    name="mlvamaps",
    version=_version(),
    description="MLVA/VNTR genotyping from sequencing reads and assemblies",
    long_description=(ROOT / "README.md").read_text(encoding="utf-8"),
    long_description_content_type="text/markdown",
    url="https://github.com/microbemarsh/mlvamaps",
    project_urls={
        "Repository": "https://github.com/microbemarsh/mlvamaps",
        "Issues": "https://github.com/microbemarsh/mlvamaps/issues",
    },
    author="mlvamaps contributors",
    license="GPL-3.0-only",
    keywords=["mlva", "vntr", "amplicon", "genotyping", "bioinformatics"],
    classifiers=[
        "Development Status :: 3 - Alpha",
        "Environment :: Console",
        "Intended Audience :: Science/Research",
        "Natural Language :: English",
        "Operating System :: POSIX",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.10",
        "Programming Language :: Python :: 3.11",
        "Programming Language :: Python :: 3.12",
        "Programming Language :: Python :: 3.13",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
    ],
    python_requires=">=3.10",
    packages=find_packages(include=["mlvamaps", "mlvamaps.*"]),
    install_requires=[
        "numpy>=1.24",
        "parasail>=1.3.4",
        "pysam>=0.22",
        "regex>=2024.5.15",
        "sassy-rs>=0.2.6",
        "spoars>=0.1.3,<0.2",
    ],
    extras_require={
        "dev": ["pytest"],
    },
    entry_points={"console_scripts": ["mlvamaps=mlvamaps.cli:main"]},
)