software.qmd

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# Scientific Software

-   **Bibliometrix**\
    An R package for comprehensive science mapping and bibliometric analysis. It supports a full bibliometric workflow, including data import, descriptive analysis, science mapping, and visualization.\
    🔗 <a href="https://www.bibliometrix.org" target="_blank">bibliometrix.org</a>

-   **Biblioshiny**\
    A user-friendly Shiny web interface for Bibliometrix, enabling researchers to conduct advanced bibliometric and science mapping analyses without coding.

-   **TAll – Text Analysis for All**\
    A general-purpose R Shiny application for text data analysis, supporting topic modeling, frequency analysis, clustering, and content classification.\
    🔗 <a href="https://github.com/massimoaria/tall" target="_blank">https://github.com/massimoaria/tall</a>

-   **E2Tree**\
    An explainable machine learning approach based on ensemble trees, designed to generate interpretable models from complex data, with visual exploration tools for decision rules.\
    🔗 <a href="https://github.com/massimoaria/e2tree" target="_blank">https://github.com/massimoaria/e2tree</a>

-   **DimensionsR**\
    An R package that provides programmatic access to the Dimensions API, allowing bibliometric researchers to retrieve and analyze data on publications, grants, clinical trials, and patents.\
    🔗 <a href="https://github.com/massimoaria/dimensionsR" target="_blank">https://github.com/massimoaria/dimensionsR</a>

-   **PubmedR**\
    An R interface to the PubMed API for searching, downloading, and analyzing biomedical literature metadata, useful for systematic literature reviews and medical informatics.\
    🔗 <a href="https://github.com/massimoaria/pubmedR" target="_blank">https://github.com/massimoaria/pubmedR</a>

-   **contentanalysis**\
    Tools for extracting and analyzing scientific content from PDFs, including citation extraction and reference matching.\
    🔗 <a href="https://github.com/massimoaria/contentanalysis" target="_blank">https://github.com/massimoaria/contentanalysis</a>

-   **OpenalexR**\
    An R client for the OpenAlex API, facilitating access to open bibliographic metadata for scholarly publications, authors, institutions, and citations.\
    🔗 <a href="https://docs.ropensci.org/openalexR/" target="_blank">https://docs.ropensci.org/openalexR/</a>

-   **PLS-SEM Matlab Toolbox**\
    A Matlab/Octave package for Partial Least Squares Structural Equation Models.\
    🔗 <a href="https://github.com/massimoaria/PLS-SEM" target="_blank">https://github.com/massimoaria/PLS-SEM</a>