Release v0.8a1

ivh · claude · ivh · commit b0864d6b44ae · 2026-02-03T13:19:03.000+01:00
Co-Authored-By: Claude Opus 4.5 &lt;noreply@anthropic.com&gt;
diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml
@@ -36,8 +36,8 @@ jobs:
     - name: Run pre-commit hooks
       run: uv run pre-commit run --all-files
 
-    - name: Test with pytest (non-slow tests)
-      run: uv run pytest -m "not slow" --cov=pyreduce --cov-report=xml --cov-report=term
+    - name: Test with pytest (unit tests)
+      run: uv run pytest -m unit --cov=pyreduce --cov-report=xml --cov-report=term
 
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v4
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,6 +1,30 @@
 # Changelog
 
 
+## [0.8a1] - 2026-02-03
+
+### Added
+- Charslit extraction backend with degree 1-5 curvature support
+- ANDES_RIZ instrument configuration and settings
+- `trace_by` config for separate tracing of illumination groups
+- HDF-to-wavecal tool and reference files for ANDES_RIZ
+- ANDES spectra plotting tool
+
+### Changed
+- Curvature: use literal pixel extraction_height, not fractional
+- Simplify extraction_height to single full-height value
+- Move fiber selection default from hardcoded to config
+- Update METIS_IFU for dynamic wavelength-based channels
+- Use git URL for charslit optional dependency
+
+### Removed
+- PEP 723 inline metadata from examples (caused confusion with `uv run`)
+
+### Fixed
+- Fix curve_height to use new full-height format in plot_comparison
+- Fix extraction_height to give exactly N rows
+- Fix CRIRES_PLUS docstring (was incorrectly HARPS)
+
 ## [0.7] - 2026-01-25
 
 First stable release of the 0.7 series!
diff --git a/CLAUDE.md b/CLAUDE.md
@@ -335,26 +335,19 @@ To release a new version (e.g., `0.7a6`):
 
 3a. **sync** - run `uv sync` to get the new version into uv.lock
 
-4. **Update example headers** - all `examples/*.py` have PEP 723 metadata:
-   ```python
-   # /// script
-   # dependencies = ["pyreduce-astro>=0.7a6"]
-   # ///
-   ```
-
-5. **Run unit tests** to catch issues before release:
+4. **Run unit tests** to catch issues before release:
    ```bash
    uv run pytest -m unit
    ```
 
-6. **Commit, tag, and push**:
+5. **Commit, tag, and push**:
    ```bash
-   git add -A && git commit -m "Release v0.7a6"
-   git tag v0.7a6
+   git add -A && git commit -m "Release v0.8a1"
+   git tag v0.8a1
    git push && git push --tags
    ```
 
-7. **Monitor GitHub Actions** - the tag push triggers:
+6. **Monitor GitHub Actions** - the tag push triggers:
    - Tests on Python 3.13
    - Wheel builds (Linux, Windows, macOS)
    - PyPI upload
diff --git a/examples/andes_riz.py b/examples/andes_riz.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 ANDES_RIZ instrument example: Step-by-step pipeline execution.
 
diff --git a/examples/andes_yjh_example.py b/examples/andes_yjh_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 ANDES_YJH instrument example: Multi-fiber tracing with Pipeline API.
 
diff --git a/examples/crires_plus_example.py b/examples/crires_plus_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a CRIRES+ dataset, and runs the extraction
diff --git a/examples/custom_instrument_example.py b/examples/custom_instrument_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a sample UVES dataset, and runs the full extraction
diff --git a/examples/debug_single_swath.py b/examples/debug_single_swath.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Debug script for extracting a single swath from a specific trace.
 
diff --git a/examples/harpn_example.py b/examples/harpn_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a HARPS-N dataset, and runs the extraction
diff --git a/examples/harps_example.py b/examples/harps_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a sample HARPS dataset, and runs the full extraction
diff --git a/examples/harps_gridsearch.py b/examples/harps_gridsearch.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 import os.path
 
 import matplotlib.pyplot as plt
diff --git a/examples/just_one_swath.py b/examples/just_one_swath.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 import matplotlib.pyplot as plt
 import numpy as np
 from astropy.io import fits
diff --git a/examples/jwst_miri_example.py b/examples/jwst_miri_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a JWST MIRI dataset, and runs the extraction
diff --git a/examples/jwst_niriss_example.py b/examples/jwst_niriss_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a sample JWST NIRISS dataset, and runs the extraction
diff --git a/examples/lick_apf_example.py b/examples/lick_apf_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a Lick APF dataset, and runs the extraction
diff --git a/examples/mcdonald_example.py b/examples/mcdonald_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a McDonald Observatory dataset, and runs the extraction
diff --git a/examples/metis_ifu_example.py b/examples/metis_ifu_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a simulated METIS dataset, and runs the full extraction
diff --git a/examples/metis_lss_example.py b/examples/metis_lss_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a simulated METIS dataset, and runs the full extraction
diff --git a/examples/micado_example.py b/examples/micado_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a ScopeSim simulated MICADO dataset (with updated spectral layout and updated line lists), and runs the full extraction.
diff --git a/examples/mosaic_nir.py b/examples/mosaic_nir.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 MOSAIC NIR spectrograph example using config-based fiber grouping.
 
diff --git a/examples/mosaic_preset-slitfunc.py b/examples/mosaic_preset-slitfunc.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 MOSAIC NIR spectrograph example using preset slit function from flat.
 
diff --git a/examples/mosaic_vis.py b/examples/mosaic_vis.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 MOSAIC VIS spectrograph example.
 
diff --git a/examples/neid_example.py b/examples/neid_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 NEID reduction example
 
diff --git a/examples/nirspec_example.py b/examples/nirspec_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a sample NIRSPEC dataset, and runs the extraction
diff --git a/examples/toes_example.py b/examples/toes_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 import numpy as np
 
 from pyreduce.configuration import get_configuration_for_instrument
diff --git a/examples/uves_callfunc.py b/examples/uves_callfunc.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Example showing direct function calls for each step.
 
diff --git a/examples/uves_example.py b/examples/uves_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a sample UVES dataset, and runs the full extraction
diff --git a/examples/xshooter_example.py b/examples/xshooter_example.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7"]
-# ///
 """
 Simple usage example for PyReduce
 Loads a sample XSHOOTER dataset, and runs the extraction
diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "pyreduce-astro"
-version = "0.7"
+version = "0.8a1"
 requires-python = ">=3.13"
 description = "A data reduction package for echelle spectrographs"
 readme = "README.md"
diff --git a/tools/andes_hdf_to_wavecal.py b/tools/andes_hdf_to_wavecal.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.10"
-# dependencies = ["h5py", "numpy"]
-# ///
 """
 Generate PyReduce wavecal files from ANDES E2E HDF optical models.
 
diff --git a/tools/andes_plot_spectra.py b/tools/andes_plot_spectra.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.10"
-# dependencies = ["numpy", "matplotlib", "astropy"]
-# ///
 """
 Plot ANDES LFC spectra for all channels.
 
diff --git a/tools/mosaic_vis_bundle_plot.py b/tools/mosaic_vis_bundle_plot.py
@@ -1,7 +1,3 @@
-# /// script
-# requires-python = ">=3.13"
-# dependencies = ["pyreduce-astro>=0.7b3"]
-# ///
 """
 Plot MOSAIC VIS quadrants with bundle centers overlaid.
 """
diff --git a/uv.lock b/uv.lock
