tutorial/nextflow.config at master · isugifNF/tutorial · GitHub

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 manifest {
  name = 'isugifNF/tutorial'
  author = 'Andrew Severin'
  homePage = 'www.bioinformaticsworkbook.org'
  description = 'nextflow bash'
  mainScript = 'main.nf'
  version = '1.0.0'
 }

params {
  query = "$PWD/input.fasta"
  dbDir = "$PWD/DB/"
  dbName = "blastDB"
  threads = 2
  outdir = "out_dir"
  outFileName = "input.blastout"
  options = "-evalue 1e-3"
  outfmt = "'6'"
  app = "blastn"
  help = false
  chunkSize = 1
}

timeline {
  enabled = true
  file = "$params.outdir/timeline.html"
}

report {
  enabled = true
  file = "$params.outdir/report.html"
}

profiles {
  slurm { includeConfig './configs/slurm.config' }
  test { includeConfig './configs/test.config' }
docker {
    docker.enabled = true
  }

  singularity {
    singularity.enabled = true
    singularity.autoMounts = true
  }
}