pub.tools/pyproject.toml at master · imsweb/pub.tools · GitHub

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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "pub.tools"
dynamic = ["version"]
readme = "README.md"
requires-python = ">=3.11"
description = "Get publication metadata from NCBI's eUtils and generate citations."
classifiers = [
          "Programming Language :: Python :: 3",
          "Topic :: Scientific/Engineering",
          "Topic :: Scientific/Engineering :: Bio-Informatics",
          "Topic :: Software Development :: Libraries :: Python Modules",
]
authors = [
    { name = "Eric Wohnlich", email = "wohnlice@imsweb.com" }
]
license = { text = "GPL" }

dependencies = [
    "biopython>=1.83",
    "requests",
    "lxml",
    "unidecode",
    "beautifulsoup4",
    "deprecation"
]

[project.optional-dependencies]
test = ["pytest"]

[project.urls]
homepage = "https://github.com/imsweb/pub.tools"
documentation = "https://imsweb.github.io/pub.tools"

[tool.coverage.report]
include = ["pub/tools/*"]
omit = ["venv", "/tests*", "*upgrades.py"]

[tool.ruff]
target-version = "py311"
line-length = 120
fix = true
lint.select = [
    # flake8-2020
    "YTT",
    # flake8-bandit
    "S",
    # flake8-bugbear
    "B",
    # flake8-builtins
    "A",
    # flake8-comprehensions
    "C4",
    # flake8-debugger
    "T10",
    # flake8-simplify
    "SIM",
    # mccabe
    "C90",
    # pycodestyle
    "E", "W",
    # pyflakes
    "F",
    # pygrep-hooks
    "PGH",
    # pyupgrade
    "UP",
    # ruff
    "RUF",
]
lint.ignore = [
    "C901",
    "E731",
    "S602",
    "S314",
    "S324",
    "SIM105"
]

[tool.ruff.format]
preview = true

[tool.ruff.lint.per-file-ignores]
"tests/*" = ["S101"]

[tool.hatch.version]
path = "pub/tools/__init__.py"

[tool.hatch.build]
packages = ["pub"]

[tool.hatch.envs.default.scripts]
test = "pytest {args:tests}"
test-cov = "coverage run -m pytest {args:tests}"
cov-report = "coverage html"
cov = [
    "test-cov",
    "cov-report",
]

[tool.pytest.ini_options]
testpaths = ["tests"]
filterwarnings = [
]