Repository navigation
Merge branch 'main' of https://github.com/hackbio-ca/PRISM #3
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Deploy to AWS ECS | |
| on: | |
| push: | |
| branches: [ main, interface ] | |
| paths: | |
| - 'interface/backend/**' | |
| - 'Dockerfile' | |
| - '.github/workflows/**' | |
| # Allow manual triggering | |
| workflow_dispatch: | |
| env: | |
| AWS_REGION: us-east-1 | |
| ECR_REPOSITORY: bioinfo/repo | |
| ECS_SERVICE: prism-api-service-0u9t6ggt | |
| ECS_CLUSTER: bioinfo-cluster | |
| ECS_TASK_DEFINITION: prism-api | |
| CONTAINER_NAME: prism-container | |
| jobs: | |
| deploy: | |
| name: Deploy to ECS | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-session-token: ${{ secrets.AWS_SESSION_TOKEN }} | |
| aws-region: ${{ env.AWS_REGION }} | |
| - name: Login to Amazon ECR | |
| id: login-ecr | |
| uses: aws-actions/amazon-ecr-login@v2 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build, tag, and push image to Amazon ECR | |
| id: build-image | |
| env: | |
| ECR_REGISTRY: ${{ steps.login-ecr.outputs.registry }} | |
| IMAGE_TAG: ${{ github.sha }} | |
| run: | | |
| # Build Docker image for x86_64 (ECS Fargate compatibility) | |
| docker buildx build \ | |
| --platform linux/amd64 \ | |
| --tag $ECR_REGISTRY/$ECR_REPOSITORY:$IMAGE_TAG \ | |
| --tag $ECR_REGISTRY/$ECR_REPOSITORY:latest \ | |
| --push . | |
| echo "image=$ECR_REGISTRY/$ECR_REPOSITORY:$IMAGE_TAG" >> $GITHUB_OUTPUT | |
| - name: Download task definition | |
| run: | | |
| aws ecs describe-task-definition \ | |
| --task-definition $ECS_TASK_DEFINITION \ | |
| --query taskDefinition > task-definition-raw.json | |
| # Clean task definition by removing unsupported fields for GitHub Actions | |
| jq 'del(.enableFaultInjection, .taskDefinitionArn, .revision, .status, .requiresCompatibilities, .placementConstraints, .compatibilities, .registeredAt, .registeredBy)' \ | |
| task-definition-raw.json > task-definition.json | |
| - name: Fill in the new image ID in the Amazon ECS task definition | |
| id: task-def | |
| uses: aws-actions/amazon-ecs-render-task-definition@v1 | |
| with: | |
| task-definition: task-definition.json | |
| container-name: ${{ env.CONTAINER_NAME }} | |
| image: ${{ steps.build-image.outputs.image }} | |
| - name: Deploy Amazon ECS task definition | |
| uses: aws-actions/amazon-ecs-deploy-task-definition@v1 | |
| with: | |
| task-definition: ${{ steps.task-def.outputs.task-definition }} | |
| service: ${{ env.ECS_SERVICE }} | |
| cluster: ${{ env.ECS_CLUSTER }} | |
| wait-for-service-stability: true | |
| - name: Service deployment summary | |
| run: | | |
| echo "🚀 Deployment successful!" | |
| echo "📦 Image: ${{ steps.build-image.outputs.image }}" | |
| echo "🎯 Service: ${{ env.ECS_SERVICE }}" | |
| echo "🔗 Check your ALB URL for the updated API" |