I'm using firecloud-dalmatian==0.0.17 and get an error message when trying to import a public config:
wm.import_config('broadinstitute-gtex/rnaseq_bam_star_rsem_rnaseqc_v1-2_BETA_cfg')
UnboundLocalError Traceback (most recent call last)
in
----> 1 wm.import_config('broadinstitute-gtex/rnaseq_bam_star_rsem_rnaseqc_v1-2_BETA_cfg')
~/anaconda3/lib/python3.7/site-packages/dalmatian/wmanager.py in import_config(self, reference)
1161 """
1162 # get latest snapshot
-> 1163 c = get_config(reference)
1164 if len(c)==0:
1165 raise ValueError('Configuration "{}" not found (name must match exactly).'.format(reference))
~/anaconda3/lib/python3.7/site-packages/dalmatian/core.py in get_config(reference)
634 3) reference = "name"
635 """
--> 636 namespace, name, version = decode_config(namespace, name, decode_only=True)
637 return _get_config_internal(namespace, name)
638
UnboundLocalError: local variable 'namespace' referenced before assignment
The wm object is okay, because commands like wm.get_samples() work as expected.
Any suggestions?
Thanks,
Binyamin
I'm using firecloud-dalmatian==0.0.17 and get an error message when trying to import a public config:
wm.import_config('broadinstitute-gtex/rnaseq_bam_star_rsem_rnaseqc_v1-2_BETA_cfg')UnboundLocalError Traceback (most recent call last)
in
----> 1 wm.import_config('broadinstitute-gtex/rnaseq_bam_star_rsem_rnaseqc_v1-2_BETA_cfg')
~/anaconda3/lib/python3.7/site-packages/dalmatian/wmanager.py in import_config(self, reference)
1161 """
1162 # get latest snapshot
-> 1163 c = get_config(reference)
1164 if len(c)==0:
1165 raise ValueError('Configuration "{}" not found (name must match exactly).'.format(reference))
~/anaconda3/lib/python3.7/site-packages/dalmatian/core.py in get_config(reference)
634 3) reference = "name"
635 """
--> 636 namespace, name, version = decode_config(namespace, name, decode_only=True)
637 return _get_config_internal(namespace, name)
638
UnboundLocalError: local variable 'namespace' referenced before assignment
The
wmobject is okay, because commands likewm.get_samples()work as expected.Any suggestions?
Thanks,
Binyamin