From 88f83f7705eb3fdb56ef486c6c0735b71c022c93 Mon Sep 17 00:00:00 2001
From: Eric <eb167@nyu.edu>
Date: Fri, 15 May 2026 16:47:15 -0400
Subject: [PATCH] Update conda configuration in nextflow template

---
 nextflow.config.template | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/nextflow.config.template b/nextflow.config.template
index b856a28..e1d9190 100644
--- a/nextflow.config.template
+++ b/nextflow.config.template
@@ -123,8 +123,9 @@ profiles {
 	}
 
         process {
+			module 'anaconda3/2025.06'
             conda = "${baseDir}/environment.yml"
-            beforeScript = 'module load anaconda3/2025.06'
+            
             withName: '_basecall_picard' {
                 container = 'docker://broadinstitute/picard:3.4.0'