diff --git a/nextflow.config.template b/nextflow.config.template index b856a28..e1d9190 100644 --- a/nextflow.config.template +++ b/nextflow.config.template @@ -123,8 +123,9 @@ profiles { } process { + module 'anaconda3/2025.06' conda = "${baseDir}/environment.yml" - beforeScript = 'module load anaconda3/2025.06' + withName: '_basecall_picard' { container = 'docker://broadinstitute/picard:3.4.0'