[Feature] catch existing atlas files early in atlas generation script rather than at the end #731
Description
Embarrasingly often I get the following error after running a long atlas generation script.
I understand the desire to not automatically overwrite files but we could potentially move this to the beginning of the atlas generation template rather than occuring at the end.
File "/home/harryc/github/brainglobe-atlasapi/brainglobe_atlasapi/bg_atlas.py", line 88, in __init__
if self.local_full_name is None:
^^^^^^^^^^^^^^^^^^^^
File "/home/harryc/github/brainglobe-atlasapi/brainglobe_atlasapi/bg_atlas.py", line 145, in local_full_name
raise FileExistsError(
FileExistsError: Multiple versions of atlas carea_mouse_25um in /home/harryc/brainglobe_workingdir/carea_mouse
We could also add an argument here which allows the atlas generator to overwrite existing files https://github.com/brainglobe/brainglobe-atlasapi/blob/main/brainglobe_atlasapi/atlas_generation/wrapup.py#L288-L292