NOTICE

SNF2
Copyright (c) 2026 BHKLab

SNF2 is distributed under the MIT License. See LICENSE for the complete terms.

Algorithm and implementation provenance
---------------------------------------

SNF2 implements Similarity Network Fusion and was informed by these reference
implementations:

- SNFpy by Ross Markello, commit
  fd65e388a560dbe106ddd7b0c37599c0a499fb3e
  https://github.com/rmarkello/snfpy
  Reference file: snf/compute.py; source distribution license: LGPLv3.
- SNFtool by Bo Wang, Aziz Mezlini, Feyyaz Demir, Marc Fiume, Zhuowen Tu,
  Michael Brudno, Benjamin Haibe-Kains, and Anna Goldenberg, commit
  64ade299d2cd10e6605063637fed1103564d0ea4
  https://github.com/cran/SNFtool
  Reference file: R/SNF.R; source distribution license: GPL.

SNFtool is used as the numerical-behavior reference. SNFpy informed the Python
API and implementation structure. Neither reference repository is bundled in
the SNF2 distributions.

Scientific citation
-------------------

Wang B, Mezlini AM, Demir F, Fiume M, Tu Z, Brudno M, Haibe-Kains B,
Goldenberg A. Similarity network fusion for aggregating data types on a
genomic scale. Nature Methods. 2014;11:333-337.
https://doi.org/10.1038/nmeth.2810