CADRE/NAMESPACE at master · bebeklab/CADRE · GitHub

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# Generated by roxygen2: do not edit by hand

export(analyzeDrugCellInteractions)
export(analyzeDysregulatedPathways)
export(calculate_performance_metrics)
export(collapseProbes)
export(collapseProbesAndValidate)
export(finalizeResults)
export(generateGraph)
export(load_and_preprocess_data)
export(normalizeGroupData)
export(order_2columns)
export(performPathwayAnalysis)
export(prediction_by_cluster)
export(processTissueCancerInfo)
export(retrieveGEOData)
import(Biobase)
import(GEOquery)
importFrom(PRROC,pr.curve)
importFrom(dplyr,"%>%")
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,ntile)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(fgsea,fgsea)
importFrom(fgsea,gmtPathways)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,theme_minimal)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,cluster_walktrap)
importFrom(igraph,degree)
importFrom(igraph,delete.edges)
importFrom(igraph,delete.vertices)
importFrom(igraph,get.edgelist)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,membership)
importFrom(igraph,simplify)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTable)
importFrom(pROC,auc)
importFrom(pROC,roc)
importFrom(parallel,clusterEvalQ)
importFrom(parallel,clusterExport)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(reshape2,melt)
importFrom(tidyr,separate)