cvrmap/docker-compose.yml at main · arovai/cvrmap · GitHub

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services:
  cvrmap:
    build:
      context: .
      dockerfile: Dockerfile
    image: arovai/cvrmap:0.1.0
    container_name: cvrmap
    volumes:
      # Mount your BIDS dataset and derivatives
      - ${DATA_DIR:-./data/input}:/data/input:ro
      - ${OUTPUT_DIR:-./data/output}:/data/output
      - ${WORK_DIR:-./data/work}:/data/work
    environment:
      - INPUT_DIR=/data/input
      - OUTPUT_DIR=/data/output
      - WORK_DIR=/data/work
    # Override the command to run specific analysis
    # Example: docker-compose run cvrmap /data/input /data/output participant --task gas --derivatives fmriprep=/data/input/derivatives/fmriprep
    command: ["--help"]

  # Development service with source code mounted
  cvrmap-dev:
    build:
      context: .
      dockerfile: Dockerfile
      target: builder
    image: arovai/cvrmap:0.1.0-dev
    container_name: cvrmap-dev
    volumes:
      - .:/opt/cvrmap/src
      - ${DATA_DIR:-./data/input}:/data/input:ro
      - ${OUTPUT_DIR:-./data/output}:/data/output
      - ${WORK_DIR:-./data/work}:/data/work
    environment:
      - INPUT_DIR=/data/input
      - OUTPUT_DIR=/data/output
      - WORK_DIR=/data/work
      - PYTHONPATH=/opt/cvrmap/src
    working_dir: /opt/cvrmap/src
    command: ["bash"]
    stdin_open: true
    tty: true