Add a 4th step that will decontaminate your data. Options to include: - [ ] [decontam](https://docs.qiime2.org/2024.10/plugins/available/quality-control/decontam-identify-batches/) as implemented in qiime2 - [ ] [SCRuB](https://shenhav-and-korem-labs.github.io/SCRuB/) - [ ] batch mode for either option Needs to take a metadata file. Should it also optionally redo diversity plots?
Add a 4th step that will decontaminate your data. Options to include:
Needs to take a metadata file. Should it also optionally redo diversity plots?