Hi, I encountered an issue while using kgwasflow. The environment created for kmergwas is R=3.5.1, but the program reported an error stating that the required R version for mass is 4.4 or higher. The specific error message is:
Error: This is R 3.5.1, the package ‘MASS’ requires >= 4.4.0
Execution stopped
Traceback (most recent call last):
File “scripts/external/kmers_gwas/kmers_gwas.py”, line 278, in
main()
File “scripts/external/kmers_gwas/kmers_gwas.py”, line 107, in main
phenotypes_names = file(paths[“pheno_permuted_fn”] ,‘r’).read().split(“\n”)[0].split(“\t”)[1:]
IOError: [Errno 2] No such file or directory: ‘results/kmers_gwas/shoot_arc/pheno.phenotypes_and_permutations’
However, r=4.4 and Python 2.7 seem to conflict and cannot be installed in the same conda environment. How can I resolve this issue?
Thank you in advance for your assistance.
Hi, I encountered an issue while using kgwasflow. The environment created for kmergwas is R=3.5.1, but the program reported an error stating that the required R version for mass is 4.4 or higher. The specific error message is:
Error: This is R 3.5.1, the package ‘MASS’ requires >= 4.4.0
Execution stopped
Traceback (most recent call last):
File “scripts/external/kmers_gwas/kmers_gwas.py”, line 278, in
main()
File “scripts/external/kmers_gwas/kmers_gwas.py”, line 107, in main
phenotypes_names = file(paths[“pheno_permuted_fn”] ,‘r’).read().split(“\n”)[0].split(“\t”)[1:]
IOError: [Errno 2] No such file or directory: ‘results/kmers_gwas/shoot_arc/pheno.phenotypes_and_permutations’
However, r=4.4 and Python 2.7 seem to conflict and cannot be installed in the same conda environment. How can I resolve this issue?
Thank you in advance for your assistance.