Bump monai from 1.3.0 to 1.5.2rc1 in /research/gemini #113

	name: nnUNet Smoke Tests

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main
	workflow_dispatch:

	jobs:
	test:
	runs-on: ubuntu-22.04
	permissions:
	contents: read
	actions: write
	strategy:
	matrix:
	group: [1, 2, 3, 4]
	steps:
	- name: Checkout code
	uses: actions/checkout@v6

	- name: Install uv
	uses: astral-sh/setup-uv@v7.6.0
	with:
	version: "0.9.11"
	enable-cache: true

	- name: Set up Python
	uses: actions/setup-python@v6.2.0
	with:
	python-version-file: ".python-version"

	- name: Display Python version
	run: python -c "import sys; print(sys.version)"

	- name: Set up cache
	uses: actions/cache@v5
	id: cached-uv-dependencies
	with:
	path: .venv
	key: venv-${{ runner.os }}-${{ hashFiles('**/uv.lock') }}

	- name: Set up file descriptor limit
	run: ulimit -n 4096

	- name: Install dependencies
	run: uv sync --group dev --group test

	- name: Run Script
	run: uv run pytest --test-group-count=4 --test-group=${{ matrix.group }} -v --cov fl4health --cov-report=xml tests/smoke_tests/test_nnunet_smoke_tests.py

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v5
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	slug: VectorInstitute/FL4Health
	fail_ci_if_error: true
	verbose: true

	# Deleting some temporary files and useless folders to free up space
	# Deleting /usr/share/dotnet should clear ~4GB of space.
	# Deleting /usr/local/lib/android should clear ~12GB of space.
	- name: Cleanup space (before cache save)
	run: \|
	df -h /dev/root
	sudo rm -rf /usr/share/dotnet /usr/local/lib/android
	df -h /dev/root

	- name: Minimize uv cache
	run: uv cache prune --ci

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