PANORAMA/NAMESPACE at main · SchwartzLab/PANORAMA · GitHub

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# Generated by roxygen2: do not edit by hand

export(STARalign_META)
export(addKnownRNAmods)
export(add_2OmeScore)
export(add_CtoT_MRD)
export(add_CytPer)
export(add_DR)
export(add_DRD)
export(add_ER)
export(add_ER1bpDS)
export(add_ERlog2FCh)
export(add_ERlog2FCh1bpDS)
export(add_MR)
export(add_MRD)
export(add_MRDns)
export(add_SR)
export(add_SR1bpDS)
export(add_SRD)
export(add_SRD1bpDS)
export(add_SRlog2FCh1bpDS)
export(add_biotype)
export(add_default_metrics)
export(add_default_metrics_v1)
export(add_knownRNAmods)
export(add_scoreA3p)
export(add_scoreA5p)
export(add_scoreC3p)
export(add_scoreZ_3p)
export(alignSTAR)
export(alignSTAR_docker)
export(bam2TxDT)
export(bam2txDT_META)
export(bisGenome)
export(call_RNAmods_linRegMods)
export(call_RNAmods_logRegMods)
export(callsSummary)
export(check_whichRNAmods)
export(factor_numOrd)
export(fastq_nucFreq)
export(gg_lce)
export(gg_nucFreq)
export(gg_readStats)
export(hlp_assign_scores)
export(hlp_start_CALLS)
export(is.2Ome)
export(libComplexReport)
export(libComplexReport_docker)
export(maxMCC)
export(miniMETA)
export(mkBedFromFastaTxOme)
export(mkSTARgenome)
export(mkSTARgenome_docker)
export(mkTranscriptome)
export(modelSummary)
export(panorama_META)
export(panorama_PANORAMA)
export(panorama_add_scoreA3p)
export(panorama_add_scoreA5p)
export(panorama_assignScores)
export(panorama_confMatrix)
export(panorama_evalPreds)
export(panorama_insTable)
export(panorama_makeCalls)
export(panorama_metricsBoxPlot_byNuc)
export(panorama_metricsScatterPlot_byPos)
export(panorama_plot_confMat)
export(qc_plotMetricsNArate)
export(qc_plotPredsNApct)
export(qc_predsNApct)
export(reads_report)
export(resSummary)
export(resolve_RNAmodsByDist)
export(resolve_detectedRNAmods)
export(restoreGenCoors)
export(rmTmpDir)
export(rm_knownRNAmods)
export(subsetPANORAMA_byGenes)
export(trainLinModel_RNAmods)
export(trainLinModel_allRNAmods)
export(trainLogModel_RNAmods)
export(trainLogModel_allRNAmods)
importFrom(lifecycle,deprecated)
importFrom(rlang,.data)