Skip to content
Tests

Fix medical diagnosis data setup paths #141

Sign in to view logs

Fix medical diagnosis data setup paths

Fix medical diagnosis data setup paths #141

Workflow file for this run

.github/workflows/tests.yml at 01eda59
name: Tests
on:
push:
branches: [main, main-dev]
pull_request:
branches: [main, main-dev]
workflow_dispatch:
jobs:
test-examples:
name: Test Examples
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.10', '3.11']
env:
# Skip tests requiring network/external services in CI
SAGE_EXAMPLES_MODE: test
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
pip install --upgrade pip
pip install -e ".[dev]"
- name: Install examples dependencies
run: |
pip install -e .
- name: Run example tests
run: |
pytest examples/test_apps.py -v --tb=short
continue-on-error: true
test-sage-apps-package:
name: Test sage-apps Package
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.11'
- name: Install sage-apps package
run: |
pip install -e "./apps[dev]"
- name: Run sage-apps tests
run: |
pytest apps/tests/ -v --tb=short --cov=apps/src/sage/apps --cov-report=term-missing
continue-on-error: true
test-coverage:
name: Coverage Report
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.11'
- name: Install dependencies
run: |
pip install --upgrade pip
pip install -e ".[dev]"
- name: Run tests with coverage
run: |
pytest tutorials/ apps/test_apps.py --cov=. --cov-report=xml --cov-report=term-missing
continue-on-error: true
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v4
with:
file: ./coverage.xml
flags: unittests
name: codecov-umbrella
continue-on-error: true