quickstart.bib

@article{fanfani2024reproducible,
  title={Reproducible processing of TCGA regulatory networks},
  author={Fanfani, Viola and Shutta, Katherine H and Mandros, Panagiotis and Fischer, Jonas and Saha, Enakshi and Micheletti, Soel and Chen, Chen and Guebila, Marouen Ben and Lopes-Ramos, Camila M and Quackenbush, John},
  journal={bioRxiv},
  year={2024}
}

@data{fanfaniDataverse,
author = {Fanfani, Viola},
publisher = {Harvard Dataverse},
title = {{Replication Data for: tcga-data-nf}},
UNF = {UNF:6:TYixGNR1fJyPs/vReFVaPQ==},
year = {2024},
version = {V1},
doi = {10.7910/DVN/MCSSYJ},
url = {https://doi.org/10.7910/DVN/MCSSYJ}
}

@article{du2010comparison,
  title={Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis},
  author={Du, Pan and Zhang, Xiao and Huang, Chiang-Ching and Jafari, Nadereh and Kibbe, Warren A and Hou, Lifang and Lin, Simon M},
  journal={BMC bioinformatics},
  volume={11},
  pages={1--9},
  year={2010},
  publisher={Springer}
}

@article{teschendorff2020episcore,
  title={EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data},
  author={Teschendorff, Andrew E and Zhu, Tianyu and Breeze, Charles E and Beck, Stephan},
  journal={Genome biology},
  volume={21},
  pages={1--33},
  year={2020},
  publisher={Springer}
}