diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index 2e02bdb..ebaa7ff 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -25,11 +25,11 @@ jobs:
           pip install -e .
 
       - name: Build docs
-        run: cd docs && zensical build --clean -f ../zensical.toml
+        run: cd docs && zensical build --clean
 
       - name: Upload build artifact
         if: github.event_name == 'push' && github.ref == 'refs/heads/main'
         uses: actions/upload-artifact@v4
         with:
           name: docs-build
-          path: docs/_build/
+          path: docs/site/
diff --git a/.gitignore b/.gitignore
index a74c7ff..a519bcb 100644
--- a/.gitignore
+++ b/.gitignore
@@ -50,3 +50,4 @@ AGENTS.md
 
 # Docs build output
 docs/_build/
+docs/site/
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index 3cfc5f2..0cd492b 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -10,7 +10,7 @@ build:
     - pip install --upgrade pip
     - pip install zensical
     - pip install -e .
-    - cd docs && zensical build --clean -f ../zensical.toml
+    - cd docs && zensical build --clean && cp -r site $READTHEDOCS_OUTPUT/html
 
 python:
   install:
diff --git a/zensical.toml b/docs/zensical.toml
similarity index 98%
rename from zensical.toml
rename to docs/zensical.toml
index e2306cd..b084fec 100644
--- a/zensical.toml
+++ b/docs/zensical.toml
@@ -1,4 +1,5 @@
 [project]
+docs_dir = "."
 site_name = "DNANet"
 site_description = "A deep learning framework for forensic DNA profile analysis"
 site_author = "Netherlands Forensic Institute (NFI)"