ci: fix container image def #20
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
|
Check failure on line 1 in .github/workflows/R-CMD-check.yaml
|
||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: [main, master, dev, DEV] | ||
| pull_request: | ||
| branches: [main, master, dev, DEV] | ||
| workflow_dispatch: | ||
| name: R-CMD-check | ||
| permissions: | ||
| contents: read | ||
| pull-requests: read | ||
| env: | ||
| CONTAINER_IMAGE: nciccbr/scworkflow:v1.0.2_79e5d37 | ||
| jobs: | ||
| R-CMD-check: | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: | ||
| - { os: ubuntu-latest, r: '4.1.3' } | ||
| #- { os: ubuntu-latest, r: 'oldrel-1' } | ||
| #- { os: macos-latest, r: 'release' } | ||
| runs-on: ${{ matrix.config.os }} | ||
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| R_KEEP_PKG_SOURCE: yes | ||
| container: | ||
| image: ${{ env.CONTAINER_IMAGE }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: local::. | ||
| needs: dev | ||
| - uses: r-lib/actions/check-r-package@v2 | ||
| with: | ||
| upload-snapshots: true | ||
| lint: | ||
| runs-on: ubuntu-latest | ||
| container: | ||
| image: ${{ env.CONTAINER_IMAGE }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| needs: dev | ||
| - name: Good Practice checks | ||
| shell: Rscript {0} | ||
| run: | | ||
| g <- goodpractice::gp() | ||
| g | ||
| n_failed <- length(goodpractice::failed_checks(g)) | ||
| if (n_failed > 0) { | ||
| warning(paste(n_failed, "failed checks")) | ||
| } | ||
| - name: Lint | ||
| shell: Rscript {0} | ||
| run: lintr::lint_package() | ||
| env: | ||
| LINTR_ERROR_ON_LINT: false | ||
| test-coverage: | ||
| runs-on: ubuntu-latest | ||
| container: | ||
| image: ${{ env.CONTAINER_IMAGE }} | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| needs: dev | ||
| - name: Test coverage | ||
| run: | | ||
| cov <- covr::package_coverage( | ||
| quiet = FALSE, | ||
| clean = FALSE, | ||
| install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | ||
| ) | ||
| covr::to_cobertura(cov) | ||
| shell: Rscript {0} | ||
| - uses: codecov/codecov-action@v4 | ||
| with: | ||
| fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} | ||
| file: ./cobertura.xml | ||
| plugin: noop | ||
| disable_search: true | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
| - name: Show testthat output | ||
| if: always() | ||
| run: | | ||
| ## -------------------------------------------------------------------- | ||
| find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
| shell: bash | ||
| - name: Upload test results | ||
| if: failure() | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: coverage-test-failures | ||
| path: ${{ runner.temp }}/package | ||
| check: # make sure all check jobs pass. https://github.com/orgs/community/discussions/4324#discussioncomment-3477871 | ||
| runs-on: ubuntu-latest | ||
| needs: [R-CMD-check, lint, test-coverage] | ||
| if: always() | ||
| steps: | ||
| - name: Successful build | ||
| if: ${{ !(contains(needs.*.result, 'failure')) }} | ||
| run: exit 0 | ||
| - name: Failing build | ||
| if: ${{ contains(needs.*.result, 'failure') }} | ||
| run: exit 1 | ||
