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Add new food-habits data pipeline in data-raw/food-habits (ingestion, estimators, exports) #260

Add new food-habits data pipeline in data-raw/food-habits (ingestion, estimators, exports)

Add new food-habits data pipeline in data-raw/food-habits (ingestion, estimators, exports) #260

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, dev-jct, dev-andy, dev-remi, dev-emily, foodhabits_MMM]
pull_request:
branches: [main, dev-jct, dev-andy, dev-remi, dev-emily, foodhabits_MMM]
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: windows-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
RETICULATE_PYTHON: python
R_KEEP_PKG_SOURCE: yes
PKG_SYSREQS: false
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
- uses: actions/setup-python@v5
with:
python-version: '3.11'
- name: Configure Python for R
run: |
python -m pip install --upgrade pip
python -m pip install copernicusmarine
shell: bash
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: |
any::rcmdcheck
any::testthat
any::devtools
any::reticulate
needs: check
- name: Install GitHub dependencies
run: |
remotes::install_github("pbs-assess/pacea")
remotes::install_github("PopulationEcologyDivision/Mar.data")
shell: Rscript {0}
- name: Install package
run: devtools::install()
shell: Rscript {0}
- name: Test coverage
run: covr::codecov(quiet = FALSE)
shell: Rscript {0}