Positions in the result are 0-based?

[loganylchen]

Hi there,

May I ask if the position in the final result was 0-based?

Best,

[ploy-np]

Hi @btrspg,
The final result table reported in xpore.readthedocs.io and our paper is genomic one-based coordinates. However, when you run xpore, the results will depend on what kind of index system used in the annotation file (gtf) you provide.

[AminaLEM]

Hi @ploy-np ,

If I run xpore on transcriptomic mode, does it consider 0-based annotation? I guess that from the middle position in the Kmer column ...

Thanks!