Request: Provide a container #392
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jonathangoeke
andreas-wilm
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Q&A
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Daer authors, Thanks for making Bambu available! There seem to be a number of installation or package dependency issues currently (e.g. #380). To avoid this, would it be possible to provider a Docker or Singularity container? Many thanks, |
Answered by
jonathangoeke
Sep 4, 2023
Replies: 2 comments 1 reply
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Hi @andreas-wilm |
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Answer selected by
jonathangoeke
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Excellent! Thank you @jonathangoeke. This is definitely worthwhile adding to the README! |
1 reply
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that is a good idea. I have converted this issue to a discussion so others can find it in the meantime |
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Hi @andreas-wilm
You could try the biocontainer version https://biocontainers.pro/tools/bioconductor-bambu
There is also the nf-core pipeline nanoseq that uses bambu: https://nf-co.re/nanoseq/3.1.0, but I'm not sure right now which version of Bambu is used there
Thanks!
Jonathan