Skip to content

Commit 28d4a1b

Browse files
dkazancdkazanc
committed
rearrangments of the tests order
1 parent 7af3e38 commit 28d4a1b

1 file changed

Lines changed: 164 additions & 164 deletions

File tree

‎tests/test_pipeline_big.py‎

Lines changed: 164 additions & 164 deletions
Original file line numberDiff line numberDiff line change
@@ -11,6 +11,170 @@
1111
)
1212

1313

14+
@pytest.mark.full_data
15+
def test_pipe_tomopy_tomobank_preview(
16+
get_files: Callable,
17+
cmd,
18+
tomobank_00088,
19+
tomopy_tomobank,
20+
tomobank00088_tomopy_npz,
21+
output_folder,
22+
):
23+
change_value_parameters_method_pipeline(
24+
tomopy_tomobank,
25+
method=[
26+
"standard_tomo",
27+
"standard_tomo",
28+
"standard_tomo",
29+
"standard_tomo",
30+
"standard_tomo",
31+
"standard_tomo",
32+
"find_center_vo",
33+
],
34+
key=[
35+
"preview",
36+
"data_path",
37+
"image_key_path",
38+
"rotation_angles",
39+
"darks",
40+
"flats",
41+
"ind",
42+
],
43+
value=[
44+
{"detector_y": {"start": 500, "stop": 510}},
45+
"/exchange/data",
46+
None,
47+
{
48+
"user_defined": {
49+
"start_angle": 0,
50+
"stop_angle": 179.876,
51+
"angles_total": 1500,
52+
}
53+
},
54+
{
55+
"file": "input_data",
56+
"image_key_path": None,
57+
"data_path": "/exchange/data_dark",
58+
},
59+
{
60+
"file": "input_data",
61+
"image_key_path": None,
62+
"data_path": "/exchange/data_white",
63+
},
64+
"mid",
65+
],
66+
)
67+
68+
cmd.pop(4) #: don't save all
69+
cmd.insert(5, tomobank_00088)
70+
cmd.insert(7, tomopy_tomobank)
71+
cmd.insert(8, output_folder)
72+
73+
subprocess.check_output(cmd)
74+
75+
files = get_files(output_folder)
76+
77+
#: check the generated reconstruction (hdf5 file)
78+
h5_files = list(filter(lambda x: ".h5" in x, files))
79+
assert len(h5_files) == 1
80+
81+
# load the pre-saved numpy array for comparison bellow
82+
data_gt = tomobank00088_tomopy_npz["data"]
83+
axis_slice = tomobank00088_tomopy_npz["axis_slice"]
84+
85+
res_norm = calculate_gt_residual(
86+
path_to_data="data/",
87+
h5_file_name="tomopy",
88+
h5_files=h5_files,
89+
data_gt=data_gt,
90+
axis_slice=axis_slice,
91+
)
92+
93+
assert res_norm < 1e-4
94+
95+
96+
@pytest.mark.full_data
97+
def test_pipe_FBP3d_tomobar_tomobank_preview(
98+
get_files: Callable,
99+
cmd,
100+
tomobank_00088,
101+
FBP3d_tomobar_tomobank,
102+
tomobank00088_FBP3d_tomobar,
103+
output_folder,
104+
):
105+
change_value_parameters_method_pipeline(
106+
FBP3d_tomobar_tomobank,
107+
method=[
108+
"standard_tomo",
109+
"standard_tomo",
110+
"standard_tomo",
111+
"standard_tomo",
112+
"standard_tomo",
113+
"standard_tomo",
114+
"find_center_vo",
115+
],
116+
key=[
117+
"preview",
118+
"data_path",
119+
"image_key_path",
120+
"rotation_angles",
121+
"darks",
122+
"flats",
123+
"ind",
124+
],
125+
value=[
126+
{"detector_y": {"start": 500, "stop": 510}},
127+
"/exchange/data",
128+
None,
129+
{
130+
"user_defined": {
131+
"start_angle": 0,
132+
"stop_angle": 179.876,
133+
"angles_total": 1500,
134+
}
135+
},
136+
{
137+
"file": "input_data",
138+
"image_key_path": None,
139+
"data_path": "/exchange/data_dark",
140+
},
141+
{
142+
"file": "input_data",
143+
"image_key_path": None,
144+
"data_path": "/exchange/data_white",
145+
},
146+
"mid",
147+
],
148+
)
149+
150+
cmd.pop(4) #: don't save all
151+
cmd.insert(5, tomobank_00088)
152+
cmd.insert(7, FBP3d_tomobar_tomobank)
153+
cmd.insert(8, output_folder)
154+
155+
subprocess.check_output(cmd)
156+
157+
files = get_files(output_folder)
158+
159+
#: check the generated reconstruction (hdf5 file)
160+
h5_files = list(filter(lambda x: ".h5" in x, files))
161+
assert len(h5_files) == 1
162+
163+
# load the pre-saved numpy array for comparison bellow
164+
data_gt = tomobank00088_FBP3d_tomobar["data"]
165+
axis_slice = tomobank00088_FBP3d_tomobar["axis_slice"]
166+
167+
res_norm = calculate_gt_residual(
168+
path_to_data="data/",
169+
h5_file_name="FBP3d_tomobar",
170+
h5_files=h5_files,
171+
data_gt=data_gt,
172+
axis_slice=axis_slice,
173+
)
174+
175+
assert res_norm < 1e-4
176+
177+
14178
@pytest.mark.full_data
15179
def test_pipe_FBP3d_tomobar_k11_38731_in_disk(
16180
get_files: Callable,
@@ -476,167 +640,3 @@ def test_pipe_sweep_paganin_FBP3d_tomobar_i12_119647(
476640

477641

478642
# ########################################################################
479-
480-
481-
@pytest.mark.full_data
482-
def test_pipe_tomopy_tomobank_preview(
483-
get_files: Callable,
484-
cmd,
485-
tomobank_00088,
486-
tomopy_tomobank,
487-
tomobank00088_tomopy_npz,
488-
output_folder,
489-
):
490-
change_value_parameters_method_pipeline(
491-
tomopy_tomobank,
492-
method=[
493-
"standard_tomo",
494-
"standard_tomo",
495-
"standard_tomo",
496-
"standard_tomo",
497-
"standard_tomo",
498-
"standard_tomo",
499-
"find_center_vo",
500-
],
501-
key=[
502-
"preview",
503-
"data_path",
504-
"image_key_path",
505-
"rotation_angles",
506-
"darks",
507-
"flats",
508-
"ind",
509-
],
510-
value=[
511-
{"detector_y": {"start": 500, "stop": 510}},
512-
"/exchange/data",
513-
None,
514-
{
515-
"user_defined": {
516-
"start_angle": 0,
517-
"stop_angle": 179.876,
518-
"angles_total": 1500,
519-
}
520-
},
521-
{
522-
"file": "input_data",
523-
"image_key_path": None,
524-
"data_path": "/exchange/data_dark",
525-
},
526-
{
527-
"file": "input_data",
528-
"image_key_path": None,
529-
"data_path": "/exchange/data_white",
530-
},
531-
"mid",
532-
],
533-
)
534-
535-
cmd.pop(4) #: don't save all
536-
cmd.insert(5, tomobank_00088)
537-
cmd.insert(7, tomopy_tomobank)
538-
cmd.insert(8, output_folder)
539-
540-
subprocess.check_output(cmd)
541-
542-
files = get_files(output_folder)
543-
544-
#: check the generated reconstruction (hdf5 file)
545-
h5_files = list(filter(lambda x: ".h5" in x, files))
546-
assert len(h5_files) == 1
547-
548-
# load the pre-saved numpy array for comparison bellow
549-
data_gt = tomobank00088_tomopy_npz["data"]
550-
axis_slice = tomobank00088_tomopy_npz["axis_slice"]
551-
552-
res_norm = calculate_gt_residual(
553-
path_to_data="data/",
554-
h5_file_name="tomopy",
555-
h5_files=h5_files,
556-
data_gt=data_gt,
557-
axis_slice=axis_slice,
558-
)
559-
560-
assert res_norm < 1e-4
561-
562-
563-
@pytest.mark.full_data
564-
def test_pipe_FBP3d_tomobar_tomobank_preview(
565-
get_files: Callable,
566-
cmd,
567-
tomobank_00088,
568-
FBP3d_tomobar_tomobank,
569-
tomobank00088_FBP3d_tomobar,
570-
output_folder,
571-
):
572-
change_value_parameters_method_pipeline(
573-
FBP3d_tomobar_tomobank,
574-
method=[
575-
"standard_tomo",
576-
"standard_tomo",
577-
"standard_tomo",
578-
"standard_tomo",
579-
"standard_tomo",
580-
"standard_tomo",
581-
"find_center_vo",
582-
],
583-
key=[
584-
"preview",
585-
"data_path",
586-
"image_key_path",
587-
"rotation_angles",
588-
"darks",
589-
"flats",
590-
"ind",
591-
],
592-
value=[
593-
{"detector_y": {"start": 500, "stop": 510}},
594-
"/exchange/data",
595-
None,
596-
{
597-
"user_defined": {
598-
"start_angle": 0,
599-
"stop_angle": 179.876,
600-
"angles_total": 1500,
601-
}
602-
},
603-
{
604-
"file": "input_data",
605-
"image_key_path": None,
606-
"data_path": "/exchange/data_dark",
607-
},
608-
{
609-
"file": "input_data",
610-
"image_key_path": None,
611-
"data_path": "/exchange/data_white",
612-
},
613-
"mid",
614-
],
615-
)
616-
617-
cmd.pop(4) #: don't save all
618-
cmd.insert(5, tomobank_00088)
619-
cmd.insert(7, FBP3d_tomobar_tomobank)
620-
cmd.insert(8, output_folder)
621-
622-
subprocess.check_output(cmd)
623-
624-
files = get_files(output_folder)
625-
626-
#: check the generated reconstruction (hdf5 file)
627-
h5_files = list(filter(lambda x: ".h5" in x, files))
628-
assert len(h5_files) == 1
629-
630-
# load the pre-saved numpy array for comparison bellow
631-
data_gt = tomobank00088_FBP3d_tomobar["data"]
632-
axis_slice = tomobank00088_FBP3d_tomobar["axis_slice"]
633-
634-
res_norm = calculate_gt_residual(
635-
path_to_data="data/",
636-
h5_file_name="FBP3d_tomobar",
637-
h5_files=h5_files,
638-
data_gt=data_gt,
639-
axis_slice=axis_slice,
640-
)
641-
642-
assert res_norm < 1e-4

0 commit comments

Comments
 (0)