From 3a5376402a15ef4890b3d1e1cfab117481f280aa Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 31 Aug 2026 20:03:34 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
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updates:
- [github.com/astral-sh/ruff-pre-commit: v0.16.4 → v0.16.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.16.4...v0.16.5)
---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 56f9b0b..c1c1038 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -12,7 +12,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: 'v0.16.4'
+    rev: 'v0.16.5'
     hooks:
        # Run the linter.
       - id: ruff-check

From 1ff5beeb973aef2fe4f2b7ab369c8484f68aed34 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 31 Aug 2026 20:04:10 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 README.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/README.md b/README.md
index 3368992..af3a580 100644
--- a/README.md
+++ b/README.md
@@ -29,6 +29,7 @@ graph = DependencyGraph(ode)
 G = graph.inv_dependency_graph("g_Na")
 # Visualize using matplotlib (python -m pip install matplotlib)
 import matplotlib.pyplot as plt
+
 nx.draw(G, with_labels=True, font_size=10, node_size=2000)
 plt.savefig("g_Na_mpl.png")
 ```