From 1d9b94ec3e06231cffca36c6a9401dd4e1b0332a Mon Sep 17 00:00:00 2001
From: Felix Lenner <felix.lenner@scilifelab.se>
Date: Wed, 27 May 2026 16:22:22 +0200
Subject: [PATCH] Remove model score from Nallo SNV score config

---
 .../grch38_rank_model_snvs_-v1.0-.ini         | 27 -------------------
 1 file changed, 27 deletions(-)

diff --git a/nallo/rank_model/grch38_rank_model_snvs_-v1.0-.ini b/nallo/rank_model/grch38_rank_model_snvs_-v1.0-.ini
index f5eedb0..72f0c58 100644
--- a/nallo/rank_model/grch38_rank_model_snvs_-v1.0-.ini
+++ b/nallo/rank_model/grch38_rank_model_snvs_-v1.0-.ini
@@ -845,33 +845,6 @@
 #
 # Variant call filter quality
 #
-[model_score]
-  category = variant_call_quality_filter
-  data_type = integer
-  description = Inheritance model score
-  field = INFO
-  info_key = ModelScore
-  record_rule = min
-  separators = ',',':',
-
-  [[not_reported]]
-    score = 0
-
-  [[low_qual]]
-    score = -5
-    lower = 0
-    upper = 10
-
-  [[medium_qual]]
-    score = -2
-    lower = 10
-    upper = 20
-
-  [[high_qual]]
-    score = 0
-    lower = 20
-    upper = 300
-
 [filter]
   category = variant_call_quality_filter
   data_type = string