From 06117ee611bdf226cdc618d73b54eb4ed1126e5a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor=20Bj=C3=B6rgen?= Date: Mon, 22 Jun 2026 15:29:01 +0200 Subject: [PATCH] VRS: Ignore CLINVAR_CLNSIG other, association terms MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Let the model rank the variants based on non-GWAS features, not sourced from clinvar. Signed-off-by: Tor Björgen --- src/rdds/variant_rank_score/model/model.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/src/rdds/variant_rank_score/model/model.py b/src/rdds/variant_rank_score/model/model.py index 0cf04294..1b046e31 100644 --- a/src/rdds/variant_rank_score/model/model.py +++ b/src/rdds/variant_rank_score/model/model.py @@ -1040,6 +1040,8 @@ def get_num_feature(variant: ParsableVariant, clinvar_clnsig = str(variant.__getattribute__('CSQ_CLINVAR_CLNSIG')).lower() if 'uncertain' in clinvar_clnsig or 'conflicting' in clinvar_clnsig: str_data = b'' + if clinvar_clnsig == 'other' or clinvar_clnsig == 'association': + str_data = b'' except AttributeError: pass input_dict[tensor_spec.name].append(str_data)