Describe the bug
Balsamic research SNV VCF and associated index is not delivered to Caesar. This is true for all types of balsamic cases.
It has the tag vcf-snv-research-unfiltered and vcf-snv-research-unfiltered-index from Hermes, but in CG the tag used to decide delivery is without the "unfiltered" part of the name.
Hermes: https://github.com/Clinical-Genomics/hermes/blame/main/cg_hermes/constants/tags.py
CG: https://github.com/Clinical-Genomics/cg/blob/master/cg/constants/delivery.py
To Reproduce
Steps to reproduce the behavior:
- Run
cg upload -c case for a case with delivery tag analysis
- Check delivery folder to Caesar (file is not linked)
Expected behavior
File should be delivered to Caesar when a case has "analysis" as part of the delivery type.
Additional context
My bad...! 🥲
Describe the bug
Balsamic research SNV VCF and associated index is not delivered to Caesar. This is true for all types of balsamic cases.
It has the tag
vcf-snv-research-unfilteredandvcf-snv-research-unfiltered-indexfrom Hermes, but in CG the tag used to decide delivery is without the "unfiltered" part of the name.Hermes: https://github.com/Clinical-Genomics/hermes/blame/main/cg_hermes/constants/tags.py
CG: https://github.com/Clinical-Genomics/cg/blob/master/cg/constants/delivery.py
To Reproduce
Steps to reproduce the behavior:
cg upload -c casefor a case with delivery tag analysisExpected behavior
File should be delivered to Caesar when a case has "analysis" as part of the delivery type.
Additional context
My bad...! 🥲