The latest version of cellh5 is not compatible with CellCognition.
I get the following error:
Traceback (most recent call last):
File "/Users/twalter/workspace/cecog/scripts/cecog_batch.py", line 35, in
from cecog.analyzer.core import AnalyzerCore
File "/Users/twalter/workspace/cecog/cecog/analyzer/core.py", line 23, in
from cecog.analyzer.position import PositionAnalyzer, PositionAnalyzerForBrowser
File "/Users/twalter/workspace/cecog/cecog/analyzer/position.py", line 27, in
from cecog.analyzer.timeholder import TimeHolder
File "/Users/twalter/workspace/cecog/cecog/analyzer/timeholder.py", line 34, in
from cellh5 import CH5Const, CH5File, CH5Position
File "/Users/twalter/workspace/cellh5/pysrc/cellh5.py", line 38, in
from hmm_wrapper import HMMConstraint, HMMAgnosticEstimator, normalize, hmm
ImportError: No module named hmm_wrapper
Is there a new dependency?
The latest version of cellh5 is not compatible with CellCognition.
I get the following error:
Traceback (most recent call last):
File "/Users/twalter/workspace/cecog/scripts/cecog_batch.py", line 35, in
from cecog.analyzer.core import AnalyzerCore
File "/Users/twalter/workspace/cecog/cecog/analyzer/core.py", line 23, in
from cecog.analyzer.position import PositionAnalyzer, PositionAnalyzerForBrowser
File "/Users/twalter/workspace/cecog/cecog/analyzer/position.py", line 27, in
from cecog.analyzer.timeholder import TimeHolder
File "/Users/twalter/workspace/cecog/cecog/analyzer/timeholder.py", line 34, in
from cellh5 import CH5Const, CH5File, CH5Position
File "/Users/twalter/workspace/cellh5/pysrc/cellh5.py", line 38, in
from hmm_wrapper import HMMConstraint, HMMAgnosticEstimator, normalize, hmm
ImportError: No module named hmm_wrapper
Is there a new dependency?