This package provides a library of general functions to analyze connectomes. Functions are divided into three groups:
- Modelling: Functions to model (parametrize) the connectivity of connectomes
- Randomization: Generation of randomized controls of connectomes
- Network: Network analyses based on metrics of different types
Check out a few short tutorials showing:
- How to implement most unweighted topological network metrics.
- How to compute triad counts.
- How to model and extract distance dependent parameters from connectoms with a geometric embedding.
- How to generate randomized controls of a given connectome.
To install, in your terminal run:
pip install git+https://github.com/danielaegassan/connectome_analysis.git
For the installation to work you require:
Python requirements will be installed directly and are listed here.